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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000007455RRM domain-containing protein. (361 aa)    
Predicted Functional Partners:
cstf1
WD_REPEATS_REGION domain-containing protein.
    
 0.999
cstf3
Suf domain-containing protein.
   
 0.999
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.992
cpsf1
Uncharacterized protein.
   
 0.988
cpsf3
Uncharacterized protein.
   
 0.988
cpsf4
Uncharacterized protein.
   
 0.988
sympk
Uncharacterized protein.
   
 0.988
pcf11
CID domain-containing protein.
    
 0.987
wdr33
WD_REPEATS_REGION domain-containing protein.
    
 0.985
rnps1
RRM domain-containing protein.
   
 0.983
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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