Lmx1b protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

Lmx1b

Uncharacterized protein. (99 aa)

Predicted Functional Partners:

LOC103172086

0.899

ENSCMIP00000007504

0.899

lhx4

0.828

isl2

0.812

lhx6

0.756

Ccdc40

0.701

ccdc40

0.685

isl1

0.625

Phox2b

0.599

eya2

0.596

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccdc40	Lmx1b	ENSCMIP00000046032	ENSCMIP00000007509	Uncharacterized protein.	Uncharacterized protein.	0.701
Ccdc40	ccdc40	ENSCMIP00000046032	ENSCMIP00000046021	Uncharacterized protein.	Uncharacterized protein.	0.949
ENSCMIP00000007504	Lmx1b	ENSCMIP00000007504	ENSCMIP00000007509	Homeobox domain-containing protein.	Uncharacterized protein.	0.899
LOC103172086	Lmx1b	ENSCMIP00000004788	ENSCMIP00000007509	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.899
Lmx1b	Ccdc40	ENSCMIP00000007509	ENSCMIP00000046032	Uncharacterized protein.	Uncharacterized protein.	0.701
Lmx1b	ENSCMIP00000007504	ENSCMIP00000007509	ENSCMIP00000007504	Uncharacterized protein.	Homeobox domain-containing protein.	0.899
Lmx1b	LOC103172086	ENSCMIP00000007509	ENSCMIP00000004788	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.899
Lmx1b	Phox2b	ENSCMIP00000007509	ENSCMIP00000028114	Uncharacterized protein.	Homeobox domain-containing protein.	0.599
Lmx1b	ccdc40	ENSCMIP00000007509	ENSCMIP00000046021	Uncharacterized protein.	Uncharacterized protein.	0.685
Lmx1b	eya2	ENSCMIP00000007509	ENSCMIP00000037128	Uncharacterized protein.	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	0.596
Lmx1b	isl1	ENSCMIP00000007509	ENSCMIP00000048673	Uncharacterized protein.	Uncharacterized protein.	0.625
Lmx1b	isl2	ENSCMIP00000007509	ENSCMIP00000016428	Uncharacterized protein.	Uncharacterized protein.	0.812
Lmx1b	lhx4	ENSCMIP00000007509	ENSCMIP00000039446	Uncharacterized protein.	Uncharacterized protein.	0.828
Lmx1b	lhx6	ENSCMIP00000007509	ENSCMIP00000033346	Uncharacterized protein.	Uncharacterized protein.	0.756
Phox2b	Lmx1b	ENSCMIP00000028114	ENSCMIP00000007509	Homeobox domain-containing protein.	Uncharacterized protein.	0.599
Phox2b	eya2	ENSCMIP00000028114	ENSCMIP00000037128	Homeobox domain-containing protein.	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	0.651
Phox2b	isl1	ENSCMIP00000028114	ENSCMIP00000048673	Homeobox domain-containing protein.	Uncharacterized protein.	0.573
ccdc40	Ccdc40	ENSCMIP00000046021	ENSCMIP00000046032	Uncharacterized protein.	Uncharacterized protein.	0.949
ccdc40	Lmx1b	ENSCMIP00000046021	ENSCMIP00000007509	Uncharacterized protein.	Uncharacterized protein.	0.685
eya2	Lmx1b	ENSCMIP00000037128	ENSCMIP00000007509	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	Uncharacterized protein.	0.596