LOC103182516 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC103182516

Uncharacterized protein. (562 aa)

Predicted Functional Partners:

ENSCMIP00000012719

0.859

tnr

0.837

tnc

0.837

Csmd1

0.686

ENSCMIP00000039098

0.679

ENSCMIP00000012484

0.640

lrit3

0.640

lrguk

0.636

ENSCMIP00000004712

0.615

ranbp2

0.615

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csmd1	LOC103182516	ENSCMIP00000039006	ENSCMIP00000007533	Uncharacterized protein.	Uncharacterized protein.	0.686
Csmd1	tnc	ENSCMIP00000039006	ENSCMIP00000019973	Uncharacterized protein.	Uncharacterized protein.	0.513
Csmd1	tnr	ENSCMIP00000039006	ENSCMIP00000007220	Uncharacterized protein.	Uncharacterized protein.	0.513
ENSCMIP00000004712	ENSCMIP00000012484	ENSCMIP00000004712	ENSCMIP00000012484	RanBD1 domain-containing protein.	Uncharacterized protein.	0.479
ENSCMIP00000004712	LOC103182516	ENSCMIP00000004712	ENSCMIP00000007533	RanBD1 domain-containing protein.	Uncharacterized protein.	0.615
ENSCMIP00000004712	lrit3	ENSCMIP00000004712	ENSCMIP00000015180	RanBD1 domain-containing protein.	Ig-like domain-containing protein.	0.479
ENSCMIP00000004712	ranbp2	ENSCMIP00000004712	ENSCMIP00000038177	RanBD1 domain-containing protein.	Uncharacterized protein.	0.595
ENSCMIP00000012484	ENSCMIP00000004712	ENSCMIP00000012484	ENSCMIP00000004712	Uncharacterized protein.	RanBD1 domain-containing protein.	0.479
ENSCMIP00000012484	LOC103182516	ENSCMIP00000012484	ENSCMIP00000007533	Uncharacterized protein.	Uncharacterized protein.	0.640
ENSCMIP00000012484	lrguk	ENSCMIP00000012484	ENSCMIP00000028734	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.486
ENSCMIP00000012484	ranbp2	ENSCMIP00000012484	ENSCMIP00000038177	Uncharacterized protein.	Uncharacterized protein.	0.479
ENSCMIP00000012484	tnc	ENSCMIP00000012484	ENSCMIP00000019973	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSCMIP00000012484	tnr	ENSCMIP00000012484	ENSCMIP00000007220	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSCMIP00000012719	LOC103182516	ENSCMIP00000012719	ENSCMIP00000007533	Uncharacterized protein.	Uncharacterized protein.	0.859
ENSCMIP00000039098	LOC103182516	ENSCMIP00000039098	ENSCMIP00000007533	Uncharacterized protein.	Uncharacterized protein.	0.679
ENSCMIP00000039098	tnc	ENSCMIP00000039098	ENSCMIP00000019973	Uncharacterized protein.	Uncharacterized protein.	0.513
ENSCMIP00000039098	tnr	ENSCMIP00000039098	ENSCMIP00000007220	Uncharacterized protein.	Uncharacterized protein.	0.513
LOC103182516	Csmd1	ENSCMIP00000007533	ENSCMIP00000039006	Uncharacterized protein.	Uncharacterized protein.	0.686
LOC103182516	ENSCMIP00000004712	ENSCMIP00000007533	ENSCMIP00000004712	Uncharacterized protein.	RanBD1 domain-containing protein.	0.615
LOC103182516	ENSCMIP00000012484	ENSCMIP00000007533	ENSCMIP00000012484	Uncharacterized protein.	Uncharacterized protein.	0.640