Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tprg1lHSac2 domain-containing protein. (264 aa)    
Predicted Functional Partners:
srsf2
Splicing factor, arginine/serine-rich 2.
   
 0.871
eif4a3
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.752
Srsf9
Uncharacterized protein.
   
 0.746
srsf1
Serine/arginine-rich splicing factor 1B.
   
 0.746
ENSCMIP00000031900
RRM domain-containing protein.
   
 0.746
gpr153
Uncharacterized protein.
    
 0.741
ddx51
Uncharacterized protein.
   
 0.694
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.691
snrnp70
U1 small nuclear ribonucleoprotein 70 kDa.
   
 0.670
acot7
Uncharacterized protein.
      
 0.669
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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