Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC103172896Protein phosphatase; Belongs to the PP2C family. (162 aa)    
Predicted Functional Partners:
zer1
Uncharacterized protein.
      
 0.612
pdp1
Pyruvate dehyrogenase phosphatase catalytic subunit 1-like protein.
    
 
 0.604
sort1
Sortilin.
   
  
 0.577
LOC103179426
Sortilin.
   
  
 0.577
tbc1d4
Uncharacterized protein.
      
 0.569
LOC103188634
PPM-type phosphatase domain-containing protein.
    
 
 0.528
trmt61b
Uncharacterized protein.
    
 
 0.525
stk16
Protein kinase domain-containing protein.
   
  
 0.514
mib1
Uncharacterized protein.
   
   0.510
Nat8l
N-acetyltransferase domain-containing protein.
   
  
 0.426
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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