LOC103172897 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103172897

Uncharacterized protein. (271 aa)

Predicted Functional Partners:

chmp7

0.982

chmp6

0.981

chmp1b

0.965

chmp1a

0.965

snf8

0.954

pdcd6ip

0.950

vps36

0.946

vps25

0.945

chmp2a

0.922

LOC103181485

0.916

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103172897	LOC103181485	ENSCMIP00000007577	ENSCMIP00000027175	Uncharacterized protein.	Charged multivesicular body protein 3-like protein.	0.916
LOC103172897	chmp1a	ENSCMIP00000007577	ENSCMIP00000031826	Uncharacterized protein.	Uncharacterized protein.	0.965
LOC103172897	chmp1b	ENSCMIP00000007577	ENSCMIP00000015833	Uncharacterized protein.	Uncharacterized protein.	0.965
LOC103172897	chmp2a	ENSCMIP00000007577	ENSCMIP00000011904	Uncharacterized protein.	Charged multivesicular body protein 2a.	0.922
LOC103172897	chmp6	ENSCMIP00000007577	ENSCMIP00000047974	Uncharacterized protein.	Uncharacterized protein.	0.981
LOC103172897	chmp7	ENSCMIP00000007577	ENSCMIP00000040162	Uncharacterized protein.	Uncharacterized protein.	0.982
LOC103172897	pdcd6ip	ENSCMIP00000007577	ENSCMIP00000030860	Uncharacterized protein.	BRO1 domain-containing protein.	0.950
LOC103172897	snf8	ENSCMIP00000007577	ENSCMIP00000037508	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.954
LOC103172897	vps25	ENSCMIP00000007577	ENSCMIP00000012483	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103172897	vps36	ENSCMIP00000007577	ENSCMIP00000044511	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.946
LOC103181485	LOC103172897	ENSCMIP00000027175	ENSCMIP00000007577	Charged multivesicular body protein 3-like protein.	Uncharacterized protein.	0.916
LOC103181485	chmp1a	ENSCMIP00000027175	ENSCMIP00000031826	Charged multivesicular body protein 3-like protein.	Uncharacterized protein.	0.930
LOC103181485	chmp1b	ENSCMIP00000027175	ENSCMIP00000015833	Charged multivesicular body protein 3-like protein.	Uncharacterized protein.	0.933
LOC103181485	chmp2a	ENSCMIP00000027175	ENSCMIP00000011904	Charged multivesicular body protein 3-like protein.	Charged multivesicular body protein 2a.	0.990
LOC103181485	chmp6	ENSCMIP00000027175	ENSCMIP00000047974	Charged multivesicular body protein 3-like protein.	Uncharacterized protein.	0.997
LOC103181485	chmp7	ENSCMIP00000027175	ENSCMIP00000040162	Charged multivesicular body protein 3-like protein.	Uncharacterized protein.	0.992
LOC103181485	pdcd6ip	ENSCMIP00000027175	ENSCMIP00000030860	Charged multivesicular body protein 3-like protein.	BRO1 domain-containing protein.	0.660
LOC103181485	snf8	ENSCMIP00000027175	ENSCMIP00000037508	Charged multivesicular body protein 3-like protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.922
LOC103181485	vps25	ENSCMIP00000027175	ENSCMIP00000012483	Charged multivesicular body protein 3-like protein.	Uncharacterized protein.	0.884
LOC103181485	vps36	ENSCMIP00000027175	ENSCMIP00000044511	Charged multivesicular body protein 3-like protein.	GLUE N-terminal domain-containing protein.	0.925