Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psme4Uncharacterized protein. (1829 aa)    
Predicted Functional Partners:
Psmd4
Uncharacterized protein.
    
 0.986
psma2
Proteasome endopeptidase complex.
    
 0.979
psmb4
Proteasome subunit beta.
   
 0.978
psmb2
Proteasome subunit beta.
    
 0.978
psma5
Proteasome subunit alpha type.
    
 0.976
psma1
Proteasome endopeptidase complex.
    
 0.976
psmb1
Proteasome subunit beta.
    
 0.975
psmc6
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.970
psmd14
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14.
   
 0.966
LOC103174436
Uncharacterized protein.
    
 0.964
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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