Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
thbs2Uncharacterized protein. (1224 aa)    
Predicted Functional Partners:
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.967
itga3
Integrin alpha-3; Belongs to the integrin alpha chain family.
   
 0.960
sdc1
4.1m domain-containing protein.
    
 0.953
LOC103183860
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.944
itgav
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.944
LOC103188814
Integrin beta; Belongs to the integrin beta chain family.
   
 0.939
cd36
Platelet glycoprotein 4; Belongs to the CD36 family.
    
 0.938
Sdc4
Uncharacterized protein.
     
  0.900
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.885
itga9
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.851
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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