bco2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

bco2

Uncharacterized protein. (562 aa)

Predicted Functional Partners:

asip

0.808

stard3

0.789

mitf

0.779

pibf1

0.663

fam92b

0.655

ENSCMIP00000009990

0.610

tbc1d22b

0.603

tbc1d22a

0.603

Gstp1

0.589

gchfr

0.588

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000009990	bco2	ENSCMIP00000009990	ENSCMIP00000007609	Uncharacterized protein.	Uncharacterized protein.	0.610
Gstp1	bco2	ENSCMIP00000002657	ENSCMIP00000007609	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.589
Gstp1	stard3	ENSCMIP00000002657	ENSCMIP00000017263	GST N-terminal domain-containing protein.	Uncharacterized protein.	0.670
asip	bco2	ENSCMIP00000041721	ENSCMIP00000007609	Agouti domain-containing protein.	Uncharacterized protein.	0.808
asip	mitf	ENSCMIP00000041721	ENSCMIP00000014586	Agouti domain-containing protein.	BHLH domain-containing protein.	0.664
bco2	ENSCMIP00000009990	ENSCMIP00000007609	ENSCMIP00000009990	Uncharacterized protein.	Uncharacterized protein.	0.610
bco2	Gstp1	ENSCMIP00000007609	ENSCMIP00000002657	Uncharacterized protein.	GST N-terminal domain-containing protein.	0.589
bco2	asip	ENSCMIP00000007609	ENSCMIP00000041721	Uncharacterized protein.	Agouti domain-containing protein.	0.808
bco2	fam92b	ENSCMIP00000007609	ENSCMIP00000029886	Uncharacterized protein.	Uncharacterized protein.	0.655
bco2	gchfr	ENSCMIP00000007609	ENSCMIP00000037905	Uncharacterized protein.	GTP cyclohydrolase 1 feedback regulatory protein.	0.588
bco2	mitf	ENSCMIP00000007609	ENSCMIP00000014586	Uncharacterized protein.	BHLH domain-containing protein.	0.779
bco2	pibf1	ENSCMIP00000007609	ENSCMIP00000020835	Uncharacterized protein.	Uncharacterized protein.	0.663
bco2	stard3	ENSCMIP00000007609	ENSCMIP00000017263	Uncharacterized protein.	Uncharacterized protein.	0.789
bco2	tbc1d22a	ENSCMIP00000007609	ENSCMIP00000038288	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.603
bco2	tbc1d22b	ENSCMIP00000007609	ENSCMIP00000004021	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.603
fam92b	bco2	ENSCMIP00000029886	ENSCMIP00000007609	Uncharacterized protein.	Uncharacterized protein.	0.655
fam92b	pibf1	ENSCMIP00000029886	ENSCMIP00000020835	Uncharacterized protein.	Uncharacterized protein.	0.746
fam92b	stard3	ENSCMIP00000029886	ENSCMIP00000017263	Uncharacterized protein.	Uncharacterized protein.	0.535
gchfr	bco2	ENSCMIP00000037905	ENSCMIP00000007609	GTP cyclohydrolase 1 feedback regulatory protein.	Uncharacterized protein.	0.588
mitf	asip	ENSCMIP00000014586	ENSCMIP00000041721	BHLH domain-containing protein.	Agouti domain-containing protein.	0.664