fundc2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fundc2

Uncharacterized protein. (166 aa)

Predicted Functional Partners:

map1lc3a

0.775

map1lc3b

0.775

pgam5

0.771

gabarapl2

0.750

atg12

0.677

atg5

0.677

LOC103179261

0.671

csnk2b

0.608

ENSCMIP00000035149

0.577

ulk1

0.577

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000035149	LOC103179261	ENSCMIP00000035149	ENSCMIP00000016534	Protein kinase domain-containing protein.	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	0.710
ENSCMIP00000035149	atg12	ENSCMIP00000035149	ENSCMIP00000001695	Protein kinase domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.836
ENSCMIP00000035149	atg5	ENSCMIP00000035149	ENSCMIP00000017644	Protein kinase domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.835
ENSCMIP00000035149	fundc2	ENSCMIP00000035149	ENSCMIP00000007621	Protein kinase domain-containing protein.	Uncharacterized protein.	0.577
ENSCMIP00000035149	gabarapl2	ENSCMIP00000035149	ENSCMIP00000034498	Protein kinase domain-containing protein.	Uncharacterized protein.	0.904
ENSCMIP00000035149	map1lc3a	ENSCMIP00000035149	ENSCMIP00000026156	Protein kinase domain-containing protein.	Uncharacterized protein.	0.778
ENSCMIP00000035149	map1lc3b	ENSCMIP00000035149	ENSCMIP00000036315	Protein kinase domain-containing protein.	Uncharacterized protein.	0.778
ENSCMIP00000035149	ulk1	ENSCMIP00000035149	ENSCMIP00000035152	Protein kinase domain-containing protein.	DUF3543 domain-containing protein.	0.900
LOC103179261	ENSCMIP00000035149	ENSCMIP00000016534	ENSCMIP00000035149	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Protein kinase domain-containing protein.	0.710
LOC103179261	atg12	ENSCMIP00000016534	ENSCMIP00000001695	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.819
LOC103179261	atg5	ENSCMIP00000016534	ENSCMIP00000017644	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.800
LOC103179261	fundc2	ENSCMIP00000016534	ENSCMIP00000007621	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.671
LOC103179261	gabarapl2	ENSCMIP00000016534	ENSCMIP00000034498	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.540
LOC103179261	map1lc3a	ENSCMIP00000016534	ENSCMIP00000026156	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.946
LOC103179261	map1lc3b	ENSCMIP00000016534	ENSCMIP00000036315	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.947
LOC103179261	ulk1	ENSCMIP00000016534	ENSCMIP00000035152	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	DUF3543 domain-containing protein.	0.710
atg12	ENSCMIP00000035149	ENSCMIP00000001695	ENSCMIP00000035149	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Protein kinase domain-containing protein.	0.836
atg12	LOC103179261	ENSCMIP00000001695	ENSCMIP00000016534	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	0.819
atg12	atg5	ENSCMIP00000001695	ENSCMIP00000017644	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
atg12	fundc2	ENSCMIP00000001695	ENSCMIP00000007621	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Uncharacterized protein.	0.677