fundc2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

fundc2

Uncharacterized protein. (166 aa)

Predicted Functional Partners:

pgam5

0.881

atg5

0.796

ENSCMIP00000035149

0.787

ulk1

0.787

ulk2

0.787

map1lc3a

0.747

map1lc3b

0.747

pink1

0.675

bnip3l

0.672

phb2

0.669

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000035149	atg5	ENSCMIP00000035149	ENSCMIP00000017644	Protein kinase domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.808
ENSCMIP00000035149	fundc2	ENSCMIP00000035149	ENSCMIP00000007621	Protein kinase domain-containing protein.	Uncharacterized protein.	0.787
ENSCMIP00000035149	map1lc3a	ENSCMIP00000035149	ENSCMIP00000026156	Protein kinase domain-containing protein.	Uncharacterized protein.	0.749
ENSCMIP00000035149	map1lc3b	ENSCMIP00000035149	ENSCMIP00000036315	Protein kinase domain-containing protein.	Uncharacterized protein.	0.749
ENSCMIP00000035149	pink1	ENSCMIP00000035149	ENSCMIP00000016283	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.454
ENSCMIP00000035149	ulk1	ENSCMIP00000035149	ENSCMIP00000035152	Protein kinase domain-containing protein.	DUF3543 domain-containing protein.	0.900
atg5	ENSCMIP00000035149	ENSCMIP00000017644	ENSCMIP00000035149	Autophagy protein 5; Involved in autophagic vesicle formation.	Protein kinase domain-containing protein.	0.808
atg5	bnip3l	ENSCMIP00000017644	ENSCMIP00000011914	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.509
atg5	fundc2	ENSCMIP00000017644	ENSCMIP00000007621	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.796
atg5	map1lc3a	ENSCMIP00000017644	ENSCMIP00000026156	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.991
atg5	map1lc3b	ENSCMIP00000017644	ENSCMIP00000036315	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.919
atg5	phb2	ENSCMIP00000017644	ENSCMIP00000005520	Autophagy protein 5; Involved in autophagic vesicle formation.	Prohibitin.	0.492
atg5	pink1	ENSCMIP00000017644	ENSCMIP00000016283	Autophagy protein 5; Involved in autophagic vesicle formation.	Protein kinase domain-containing protein.	0.725
atg5	ulk1	ENSCMIP00000017644	ENSCMIP00000035152	Autophagy protein 5; Involved in autophagic vesicle formation.	DUF3543 domain-containing protein.	0.912
atg5	ulk2	ENSCMIP00000017644	ENSCMIP00000046939	Autophagy protein 5; Involved in autophagic vesicle formation.	Unc-51-like kinase 2.	0.808
bnip3l	atg5	ENSCMIP00000011914	ENSCMIP00000017644	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.509
bnip3l	fundc2	ENSCMIP00000011914	ENSCMIP00000007621	Uncharacterized protein.	Uncharacterized protein.	0.672
bnip3l	map1lc3a	ENSCMIP00000011914	ENSCMIP00000026156	Uncharacterized protein.	Uncharacterized protein.	0.954
bnip3l	map1lc3b	ENSCMIP00000011914	ENSCMIP00000036315	Uncharacterized protein.	Uncharacterized protein.	0.560
bnip3l	phb2	ENSCMIP00000011914	ENSCMIP00000005520	Uncharacterized protein.	Prohibitin.	0.475