gapvd1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

gapvd1

Uncharacterized protein. (1340 aa)

Predicted Functional Partners:

rabep1

0.902

rab5c

0.770

LOC103182902

0.770

rab5b

0.770

rab5a

0.770

als2

0.750

rab22a

0.719

vps29

0.652

rab21

0.630

LOC103182442

0.630

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103182442	gapvd1	ENSCMIP00000037035	ENSCMIP00000007657	Uncharacterized protein.	Uncharacterized protein.	0.630
LOC103182902	als2	ENSCMIP00000030324	ENSCMIP00000011471	Muscle RAS oncogene-like protein.	Uncharacterized protein.	0.581
LOC103182902	gapvd1	ENSCMIP00000030324	ENSCMIP00000007657	Muscle RAS oncogene-like protein.	Uncharacterized protein.	0.770
LOC103182902	rabep1	ENSCMIP00000030324	ENSCMIP00000026262	Muscle RAS oncogene-like protein.	Uncharacterized protein.	0.806
als2	LOC103182902	ENSCMIP00000011471	ENSCMIP00000030324	Uncharacterized protein.	Muscle RAS oncogene-like protein.	0.581
als2	gapvd1	ENSCMIP00000011471	ENSCMIP00000007657	Uncharacterized protein.	Uncharacterized protein.	0.750
als2	rab22a	ENSCMIP00000011471	ENSCMIP00000035503	Uncharacterized protein.	Uncharacterized protein.	0.560
als2	rab5a	ENSCMIP00000011471	ENSCMIP00000046073	Uncharacterized protein.	Ras-related protein Rab-5A-like protein.	0.581
als2	rab5b	ENSCMIP00000011471	ENSCMIP00000035168	Uncharacterized protein.	Ras-related protein Rab-5B-like protein.	0.581
als2	rab5c	ENSCMIP00000011471	ENSCMIP00000006885	Uncharacterized protein.	Ras-related protein Rab-5C.	0.581
gapvd1	LOC103182442	ENSCMIP00000007657	ENSCMIP00000037035	Uncharacterized protein.	Uncharacterized protein.	0.630
gapvd1	LOC103182902	ENSCMIP00000007657	ENSCMIP00000030324	Uncharacterized protein.	Muscle RAS oncogene-like protein.	0.770
gapvd1	als2	ENSCMIP00000007657	ENSCMIP00000011471	Uncharacterized protein.	Uncharacterized protein.	0.750
gapvd1	rab21	ENSCMIP00000007657	ENSCMIP00000000895	Uncharacterized protein.	Uncharacterized protein.	0.630
gapvd1	rab22a	ENSCMIP00000007657	ENSCMIP00000035503	Uncharacterized protein.	Uncharacterized protein.	0.719
gapvd1	rab5a	ENSCMIP00000007657	ENSCMIP00000046073	Uncharacterized protein.	Ras-related protein Rab-5A-like protein.	0.770
gapvd1	rab5b	ENSCMIP00000007657	ENSCMIP00000035168	Uncharacterized protein.	Ras-related protein Rab-5B-like protein.	0.770
gapvd1	rab5c	ENSCMIP00000007657	ENSCMIP00000006885	Uncharacterized protein.	Ras-related protein Rab-5C.	0.770
gapvd1	rabep1	ENSCMIP00000007657	ENSCMIP00000026262	Uncharacterized protein.	Uncharacterized protein.	0.902
gapvd1	vps29	ENSCMIP00000007657	ENSCMIP00000014288	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.652