Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103191399USP domain-containing protein; Belongs to the peptidase C19 family. (378 aa)    
Predicted Functional Partners:
wdr48
WD_REPEATS_REGION domain-containing protein.
    
 0.945
wdr20
WD repeat-containing protein 20.
   
 0.856
dmwd
WD_REPEATS_REGION domain-containing protein.
   
 0.856
ar
Uncharacterized protein.
    
 0.775
uba52
Ribosomal protein L40-like isoform 1.
    
 0.690
rps27a
Ubiquitin-like domain-containing protein.
    
  0.676
ENSCMIP00000004389
PCNA_N domain-containing protein.
   
 0.630
phlpp2
Uncharacterized protein.
    
 
 0.586
phlpp1
Uncharacterized protein.
    
 
 0.586
fancd2
Uncharacterized protein.
    
 0.577
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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