Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
usp54USP domain-containing protein. (1806 aa)    
Predicted Functional Partners:
LOC103172235
Uncharacterized protein.
      
 0.630
dnah12
Uncharacterized protein.
      
 0.630
map2k5
Uncharacterized protein; Belongs to the protein kinase superfamily.
      
 0.630
rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      
 0.630
catsperb
Uncharacterized protein.
      
 0.569
uba52
Ribosomal protein L40-like isoform 1.
    
 
 0.536
rps27a
Ubiquitin-like domain-containing protein.
    
  0.534
psmb1
Proteasome subunit beta.
    
   0.495
ENSCMIP00000005022
Uncharacterized protein.
      
 0.481
tcap
Uncharacterized protein.
   
 
 0.452
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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