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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
synpo2lUncharacterized protein. (998 aa)    
Predicted Functional Partners:
ociad2
OCIA domain-containing 2.
      
 0.845
synm
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 
 0.721
lias
Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
   
  
 0.699
wdtc1
Uncharacterized protein.
    
 
 0.676
myoz1
Uncharacterized protein.
 
 
  
 0.673
arfip1
AH domain-containing protein.
      
 0.657
arfip2
AH domain-containing protein.
      
 0.657
rnf130
RING-type domain-containing protein.
   
  
 0.639
rnf150
RING-type domain-containing protein.
   
  
 0.639
dhrs7c
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.586
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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