ENSCMIP00000007771 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000007771

Uncharacterized protein. (75 aa)

Predicted Functional Partners:

sel1l

0.923

derl1

0.918

vcp

0.903

derl2

0.897

Ube2g2

0.847

sel1l2

0.829

erlec1

0.821

os9

0.821

Ubc

0.816

ubxn1

0.805

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000007771	Ubc	ENSCMIP00000007771	ENSCMIP00000028897	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.816
ENSCMIP00000007771	Ube2g2	ENSCMIP00000007771	ENSCMIP00000012151	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.847
ENSCMIP00000007771	derl1	ENSCMIP00000007771	ENSCMIP00000016840	Uncharacterized protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.918
ENSCMIP00000007771	derl2	ENSCMIP00000007771	ENSCMIP00000027841	Uncharacterized protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.897
ENSCMIP00000007771	erlec1	ENSCMIP00000007771	ENSCMIP00000007814	Uncharacterized protein.	Endoplasmic reticulum lectin 1.	0.821
ENSCMIP00000007771	os9	ENSCMIP00000007771	ENSCMIP00000031128	Uncharacterized protein.	PRKCSH domain-containing protein.	0.821
ENSCMIP00000007771	sel1l	ENSCMIP00000007771	ENSCMIP00000033889	Uncharacterized protein.	Fibronectin type-II domain-containing protein.	0.923
ENSCMIP00000007771	sel1l2	ENSCMIP00000007771	ENSCMIP00000049128	Uncharacterized protein.	Uncharacterized protein.	0.829
ENSCMIP00000007771	ubxn1	ENSCMIP00000007771	ENSCMIP00000000817	Uncharacterized protein.	UBX domain-containing protein.	0.805
ENSCMIP00000007771	vcp	ENSCMIP00000007771	ENSCMIP00000020360	Uncharacterized protein.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.903
Ubc	ENSCMIP00000007771	ENSCMIP00000028897	ENSCMIP00000007771	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.816
Ubc	Ube2g2	ENSCMIP00000028897	ENSCMIP00000012151	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.947
Ubc	derl1	ENSCMIP00000028897	ENSCMIP00000016840	Ubiquitin-like domain-containing protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.655
Ubc	derl2	ENSCMIP00000028897	ENSCMIP00000027841	Ubiquitin-like domain-containing protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.606
Ubc	erlec1	ENSCMIP00000028897	ENSCMIP00000007814	Ubiquitin-like domain-containing protein.	Endoplasmic reticulum lectin 1.	0.592
Ubc	os9	ENSCMIP00000028897	ENSCMIP00000031128	Ubiquitin-like domain-containing protein.	PRKCSH domain-containing protein.	0.592
Ubc	sel1l	ENSCMIP00000028897	ENSCMIP00000033889	Ubiquitin-like domain-containing protein.	Fibronectin type-II domain-containing protein.	0.553
Ubc	sel1l2	ENSCMIP00000028897	ENSCMIP00000049128	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.552
Ubc	ubxn1	ENSCMIP00000028897	ENSCMIP00000000817	Ubiquitin-like domain-containing protein.	UBX domain-containing protein.	0.960
Ubc	vcp	ENSCMIP00000028897	ENSCMIP00000020360	Ubiquitin-like domain-containing protein.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.967