LOC103172329 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103172329

Nsp1_C domain-containing protein. (440 aa)

Predicted Functional Partners:

nup54

0.999

nup58

0.998

ENSCMIP00000004712

0.997

ranbp2

0.997

nup93

0.996

nup98

0.986

ENSCMIP00000038913

0.986

nup88

0.985

nup205

0.978

nup107

0.977

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004712	ENSCMIP00000038913	ENSCMIP00000004712	ENSCMIP00000038913	RanBD1 domain-containing protein.	Nup214_FG domain-containing protein.	0.999
ENSCMIP00000004712	LOC103172329	ENSCMIP00000004712	ENSCMIP00000007803	RanBD1 domain-containing protein.	Nsp1_C domain-containing protein.	0.997
ENSCMIP00000004712	nup107	ENSCMIP00000004712	ENSCMIP00000025531	RanBD1 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
ENSCMIP00000004712	nup205	ENSCMIP00000004712	ENSCMIP00000030756	RanBD1 domain-containing protein.	Uncharacterized protein.	0.999
ENSCMIP00000004712	nup54	ENSCMIP00000004712	ENSCMIP00000012554	RanBD1 domain-containing protein.	Nucleoporin p54-like protein.	0.998
ENSCMIP00000004712	nup58	ENSCMIP00000004712	ENSCMIP00000020078	RanBD1 domain-containing protein.	Nucleoporin p58/p45-like protein.	0.997
ENSCMIP00000004712	nup88	ENSCMIP00000004712	ENSCMIP00000026082	RanBD1 domain-containing protein.	Uncharacterized protein.	0.998
ENSCMIP00000004712	nup93	ENSCMIP00000004712	ENSCMIP00000027263	RanBD1 domain-containing protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.999
ENSCMIP00000004712	nup98	ENSCMIP00000004712	ENSCMIP00000030981	RanBD1 domain-containing protein.	Peptidase S59 domain-containing protein.	0.996
ENSCMIP00000004712	ranbp2	ENSCMIP00000004712	ENSCMIP00000038177	RanBD1 domain-containing protein.	Uncharacterized protein.	0.475
ENSCMIP00000038913	ENSCMIP00000004712	ENSCMIP00000038913	ENSCMIP00000004712	Nup214_FG domain-containing protein.	RanBD1 domain-containing protein.	0.999
ENSCMIP00000038913	LOC103172329	ENSCMIP00000038913	ENSCMIP00000007803	Nup214_FG domain-containing protein.	Nsp1_C domain-containing protein.	0.986
ENSCMIP00000038913	nup107	ENSCMIP00000038913	ENSCMIP00000025531	Nup214_FG domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.996
ENSCMIP00000038913	nup205	ENSCMIP00000038913	ENSCMIP00000030756	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.990
ENSCMIP00000038913	nup54	ENSCMIP00000038913	ENSCMIP00000012554	Nup214_FG domain-containing protein.	Nucleoporin p54-like protein.	0.985
ENSCMIP00000038913	nup58	ENSCMIP00000038913	ENSCMIP00000020078	Nup214_FG domain-containing protein.	Nucleoporin p58/p45-like protein.	0.970
ENSCMIP00000038913	nup88	ENSCMIP00000038913	ENSCMIP00000026082	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.995
ENSCMIP00000038913	nup93	ENSCMIP00000038913	ENSCMIP00000027263	Nup214_FG domain-containing protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.990
ENSCMIP00000038913	nup98	ENSCMIP00000038913	ENSCMIP00000030981	Nup214_FG domain-containing protein.	Peptidase S59 domain-containing protein.	0.999
ENSCMIP00000038913	ranbp2	ENSCMIP00000038913	ENSCMIP00000038177	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.999