rbp3 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbp3

Uncharacterized protein. (1228 aa)

Predicted Functional Partners:

rgr

0.695

aplp2

0.652

LOC103175521

0.631

rbp1

0.605

otc

0.589

rho

0.580

LOC103179120

0.580

rcvrn

0.553

rbp2

0.553

ENSCMIP00000015449

0.539

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000015449	rbp3	ENSCMIP00000015449	ENSCMIP00000007844	UPAR/Ly6 domain-containing protein.	Uncharacterized protein.	0.539
LOC103175521	LOC103179120	ENSCMIP00000046486	ENSCMIP00000002411	Uncharacterized protein.	Rhodopsin.	0.754
LOC103175521	rbp3	ENSCMIP00000046486	ENSCMIP00000007844	Uncharacterized protein.	Uncharacterized protein.	0.631
LOC103175521	rho	ENSCMIP00000046486	ENSCMIP00000000427	Uncharacterized protein.	Rhodopsin.	0.754
LOC103179120	LOC103175521	ENSCMIP00000002411	ENSCMIP00000046486	Rhodopsin.	Uncharacterized protein.	0.754
LOC103179120	rbp3	ENSCMIP00000002411	ENSCMIP00000007844	Rhodopsin.	Uncharacterized protein.	0.580
LOC103179120	rcvrn	ENSCMIP00000002411	ENSCMIP00000006512	Rhodopsin.	Uncharacterized protein.	0.928
LOC103179120	rgr	ENSCMIP00000002411	ENSCMIP00000012474	Rhodopsin.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.694
LOC103179120	rho	ENSCMIP00000002411	ENSCMIP00000000427	Rhodopsin.	Rhodopsin.	0.902
aplp2	rbp3	ENSCMIP00000009573	ENSCMIP00000007844	Amyloid-like protein 2.	Uncharacterized protein.	0.652
otc	rbp3	ENSCMIP00000024212	ENSCMIP00000007844	Ornithine transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	Uncharacterized protein.	0.589
rbp1	rbp3	ENSCMIP00000040275	ENSCMIP00000007844	Retinol-binding protein 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Uncharacterized protein.	0.605
rbp1	rgr	ENSCMIP00000040275	ENSCMIP00000012474	Retinol-binding protein 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.671
rbp2	rbp3	ENSCMIP00000040286	ENSCMIP00000007844	FABP domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Uncharacterized protein.	0.553
rbp3	ENSCMIP00000015449	ENSCMIP00000007844	ENSCMIP00000015449	Uncharacterized protein.	UPAR/Ly6 domain-containing protein.	0.539
rbp3	LOC103175521	ENSCMIP00000007844	ENSCMIP00000046486	Uncharacterized protein.	Uncharacterized protein.	0.631
rbp3	LOC103179120	ENSCMIP00000007844	ENSCMIP00000002411	Uncharacterized protein.	Rhodopsin.	0.580
rbp3	aplp2	ENSCMIP00000007844	ENSCMIP00000009573	Uncharacterized protein.	Amyloid-like protein 2.	0.652
rbp3	otc	ENSCMIP00000007844	ENSCMIP00000024212	Uncharacterized protein.	Ornithine transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.589
rbp3	rbp1	ENSCMIP00000007844	ENSCMIP00000040275	Uncharacterized protein.	Retinol-binding protein 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.605