rbp3 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rbp3

Uncharacterized protein. (1228 aa)

Predicted Functional Partners:

clul1

0.889

ENSCMIP00000008489

0.613

rho

0.568

LOC103179120

0.568

rgr

0.564

clu

0.483

aplp2

0.456

otc

0.445

rbp1

0.431

rcvrn

0.428

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000008489	rbp3	ENSCMIP00000008489	ENSCMIP00000007844	Uncharacterized protein.	Uncharacterized protein.	0.613
LOC103179120	rbp3	ENSCMIP00000002411	ENSCMIP00000007844	Rhodopsin.	Uncharacterized protein.	0.568
LOC103179120	rcvrn	ENSCMIP00000002411	ENSCMIP00000006512	Rhodopsin.	Uncharacterized protein.	0.875
LOC103179120	rgr	ENSCMIP00000002411	ENSCMIP00000012474	Rhodopsin.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.592
LOC103179120	rho	ENSCMIP00000002411	ENSCMIP00000000427	Rhodopsin.	Rhodopsin.	0.902
aplp2	clu	ENSCMIP00000009573	ENSCMIP00000035929	Amyloid-like protein 2.	Clusterin; Belongs to the clusterin family.	0.442
aplp2	clul1	ENSCMIP00000009573	ENSCMIP00000038548	Amyloid-like protein 2.	Clusterin; Belongs to the clusterin family.	0.442
aplp2	rbp3	ENSCMIP00000009573	ENSCMIP00000007844	Amyloid-like protein 2.	Uncharacterized protein.	0.456
clu	aplp2	ENSCMIP00000035929	ENSCMIP00000009573	Clusterin; Belongs to the clusterin family.	Amyloid-like protein 2.	0.442
clu	rbp3	ENSCMIP00000035929	ENSCMIP00000007844	Clusterin; Belongs to the clusterin family.	Uncharacterized protein.	0.483
clul1	aplp2	ENSCMIP00000038548	ENSCMIP00000009573	Clusterin; Belongs to the clusterin family.	Amyloid-like protein 2.	0.442
clul1	rbp3	ENSCMIP00000038548	ENSCMIP00000007844	Clusterin; Belongs to the clusterin family.	Uncharacterized protein.	0.889
otc	rbp3	ENSCMIP00000024212	ENSCMIP00000007844	Ornithine transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	Uncharacterized protein.	0.445
rbp1	rbp3	ENSCMIP00000040275	ENSCMIP00000007844	Retinol-binding protein 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Uncharacterized protein.	0.431
rbp3	ENSCMIP00000008489	ENSCMIP00000007844	ENSCMIP00000008489	Uncharacterized protein.	Uncharacterized protein.	0.613
rbp3	LOC103179120	ENSCMIP00000007844	ENSCMIP00000002411	Uncharacterized protein.	Rhodopsin.	0.568
rbp3	aplp2	ENSCMIP00000007844	ENSCMIP00000009573	Uncharacterized protein.	Amyloid-like protein 2.	0.456
rbp3	clu	ENSCMIP00000007844	ENSCMIP00000035929	Uncharacterized protein.	Clusterin; Belongs to the clusterin family.	0.483
rbp3	clul1	ENSCMIP00000007844	ENSCMIP00000038548	Uncharacterized protein.	Clusterin; Belongs to the clusterin family.	0.889
rbp3	otc	ENSCMIP00000007844	ENSCMIP00000024212	Uncharacterized protein.	Ornithine transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.445