LOC103191409 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

LOC103191409

Uncharacterized protein. (333 aa)

Predicted Functional Partners:

LOC103173180

0.975

LOC103171785

0.974

LOC103173283

0.973

LOC103172845

0.969

ENSCMIP00000003106

0.967

nipbl

0.962

ENSCMIP00000003103

0.952

mau2

0.906

smc3

0.904

rad21

0.826

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003103	ENSCMIP00000003106	ENSCMIP00000003103	ENSCMIP00000003106	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003103	LOC103171785	ENSCMIP00000003103	ENSCMIP00000013862	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003103	LOC103172845	ENSCMIP00000003103	ENSCMIP00000007357	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003103	LOC103173180	ENSCMIP00000003103	ENSCMIP00000004031	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003103	LOC103173283	ENSCMIP00000003103	ENSCMIP00000009499	Uncharacterized protein.	Nipped-B protein.	0.952
ENSCMIP00000003103	LOC103191409	ENSCMIP00000003103	ENSCMIP00000007883	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003103	mau2	ENSCMIP00000003103	ENSCMIP00000009971	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.906
ENSCMIP00000003103	nipbl	ENSCMIP00000003103	ENSCMIP00000031931	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSCMIP00000003103	rad21	ENSCMIP00000003103	ENSCMIP00000044430	Uncharacterized protein.	Uncharacterized protein.	0.826
ENSCMIP00000003103	smc3	ENSCMIP00000003103	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.904
ENSCMIP00000003106	ENSCMIP00000003103	ENSCMIP00000003106	ENSCMIP00000003103	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003106	LOC103171785	ENSCMIP00000003106	ENSCMIP00000013862	Uncharacterized protein.	Uncharacterized protein.	0.961
ENSCMIP00000003106	LOC103172845	ENSCMIP00000003106	ENSCMIP00000007357	Uncharacterized protein.	Uncharacterized protein.	0.964
ENSCMIP00000003106	LOC103173180	ENSCMIP00000003106	ENSCMIP00000004031	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSCMIP00000003106	LOC103173283	ENSCMIP00000003106	ENSCMIP00000009499	Uncharacterized protein.	Nipped-B protein.	0.972
ENSCMIP00000003106	LOC103191409	ENSCMIP00000003106	ENSCMIP00000007883	Uncharacterized protein.	Uncharacterized protein.	0.967
ENSCMIP00000003106	mau2	ENSCMIP00000003106	ENSCMIP00000009971	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.778
ENSCMIP00000003106	nipbl	ENSCMIP00000003106	ENSCMIP00000031931	Uncharacterized protein.	Uncharacterized protein.	0.962
ENSCMIP00000003106	rad21	ENSCMIP00000003106	ENSCMIP00000044430	Uncharacterized protein.	Uncharacterized protein.	0.661
ENSCMIP00000003106	smc3	ENSCMIP00000003106	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.808