Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000007885Homeobox domain-containing protein. (231 aa)    
Predicted Functional Partners:
ENSCMIP00000047083
POU domain protein.
    
 0.916
lhx4
Uncharacterized protein.
    
 0.674
ENSCMIP00000035562
Uncharacterized protein.
   
  
 0.607
prl
Prolactin 2.
      
 0.586
ENSCMIP00000045213
Uncharacterized protein.
      
 0.586
fshb
Follicle stimulating hormone beta subunit.
   
 
 0.554
ENSCMIP00000006760
Uncharacterized protein.
    
 
 0.527
ENSCMIP00000000950
LIM zinc-binding domain-containing protein.
    
 0.517
Lhx3
Homeobox domain-containing protein.
    
 0.496
slc26a5
STAS domain-containing protein.
      
 0.483
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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