STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cop1Uncharacterized protein. (642 aa)    
Predicted Functional Partners:
ddb1
CPSF_A domain-containing protein.
    
 0.909
det1
Uncharacterized protein.
  
 
 
 0.870
rbx1
RING-type domain-containing protein.
    
 0.805
cul4a
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.739
cul4b
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.739
trib3
Protein kinase domain-containing protein.
    
 
 0.723
dda1
DDA1 domain-containing protein.
    
  0.716
atm
Non-specific serine/threonine protein kinase.
    
 0.695
etv5
ETS domain-containing protein.
    
 
 0.687
stk40
Protein kinase domain-containing protein.
    
 
 0.672
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.