Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim4Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
ENSCMIP00000021502
Uncharacterized protein.
 
 
  0.735
ldb3
LIM domain-binding protein 3.
   
 
0.586
s1pr1
Sphingosine 1-phosphate receptor 1-like protein; Belongs to the G-protein coupled receptor 1 family.
      
 0.563
LOC103185829
Uncharacterized protein.
  
  
 
0.553
pdlim3
Uncharacterized protein.
  
  
 
0.548
pdlim7
Uncharacterized protein.
   
 
 
0.543
pdlim5
Uncharacterized protein.
   
 
 
0.543
pdlim2
Uncharacterized protein.
     
 
0.540
vcl
Uncharacterized protein.
   
 0.525
ctnna3
Uncharacterized protein.
   
 0.511
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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