Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000008020Uncharacterized protein. (127 aa)    
Predicted Functional Partners:
ENSCMIP00000031181
Uncharacterized protein.
 
      0.900
lama4
Uncharacterized protein.
 
     
0.872
Lama3
Laminin IV type A domain-containing protein.
 
      0.847
ENSCMIP00000007977
Uncharacterized protein.
 
      0.837
LOC103190194
Uncharacterized protein.
 
 
0.698
ENSCMIP00000038823
Uncharacterized protein.
  
 0.606
nid2
Uncharacterized protein.
   
 0.592
nid1
Uncharacterized protein.
   
 0.592
LOC103190727
Uncharacterized protein.
   
 0.582
lamb2
Uncharacterized protein.
   
 0.582
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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