Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000008043Uncharacterized protein. (243 aa)    
Predicted Functional Partners:
LOC103173539
Uncharacterized protein.
 
   
  0.952
LOC103171990
Uncharacterized protein.
 
   
  0.952
aktip
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.893
hook3
Calponin-homology (CH) domain-containing protein.
    
 
 0.805
hook1
Calponin-homology (CH) domain-containing protein.
    
 
 0.805
hook2
Calponin-homology (CH) domain-containing protein.
    
 
 0.786
ENSCMIP00000010026
Uncharacterized protein.
    
   0.634
V9KYZ4_CALMI
B cell activating factor; Belongs to the tumor necrosis factor family.
    
   0.634
gpr78
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.481
gpr26
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.481
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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