dnpep protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dnpep

Uncharacterized protein; Belongs to the peptidase M18 family. (491 aa)

Predicted Functional Partners:

nrdc

0.827

LOC103190656

0.786

gabarapl2

0.741

ENSCMIP00000010778

0.740

nme7

0.731

rnpep

0.700

mrpl54

0.682

LOC103179261

0.675

map1lc3a

0.675

map1lc3b

0.675

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000010778	dnpep	ENSCMIP00000010778	ENSCMIP00000008075	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M18 family.	0.740
ENSCMIP00000010778	gabarapl2	ENSCMIP00000010778	ENSCMIP00000034498	Uncharacterized protein.	Uncharacterized protein.	0.564
LOC103179261	LOC103190656	ENSCMIP00000016534	ENSCMIP00000040636	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.608
LOC103179261	dnpep	ENSCMIP00000016534	ENSCMIP00000008075	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein; Belongs to the peptidase M18 family.	0.675
LOC103179261	gabarapl2	ENSCMIP00000016534	ENSCMIP00000034498	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.974
LOC103179261	map1lc3a	ENSCMIP00000016534	ENSCMIP00000026156	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.946
LOC103179261	map1lc3b	ENSCMIP00000016534	ENSCMIP00000036315	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	Uncharacterized protein.	0.471
LOC103190656	LOC103179261	ENSCMIP00000040636	ENSCMIP00000016534	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	0.608
LOC103190656	dnpep	ENSCMIP00000040636	ENSCMIP00000008075	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Uncharacterized protein; Belongs to the peptidase M18 family.	0.786
LOC103190656	gabarapl2	ENSCMIP00000040636	ENSCMIP00000034498	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Uncharacterized protein.	0.845
LOC103190656	map1lc3a	ENSCMIP00000040636	ENSCMIP00000026156	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Uncharacterized protein.	0.670
LOC103190656	map1lc3b	ENSCMIP00000040636	ENSCMIP00000036315	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Uncharacterized protein.	0.670
dnpep	ENSCMIP00000010778	ENSCMIP00000008075	ENSCMIP00000010778	Uncharacterized protein; Belongs to the peptidase M18 family.	Uncharacterized protein.	0.740
dnpep	LOC103179261	ENSCMIP00000008075	ENSCMIP00000016534	Uncharacterized protein; Belongs to the peptidase M18 family.	Microtubule-associated proteins 1A/1B light chain 3C-like protein.	0.675
dnpep	LOC103190656	ENSCMIP00000008075	ENSCMIP00000040636	Uncharacterized protein; Belongs to the peptidase M18 family.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.786
dnpep	gabarapl2	ENSCMIP00000008075	ENSCMIP00000034498	Uncharacterized protein; Belongs to the peptidase M18 family.	Uncharacterized protein.	0.741
dnpep	map1lc3a	ENSCMIP00000008075	ENSCMIP00000026156	Uncharacterized protein; Belongs to the peptidase M18 family.	Uncharacterized protein.	0.675
dnpep	map1lc3b	ENSCMIP00000008075	ENSCMIP00000036315	Uncharacterized protein; Belongs to the peptidase M18 family.	Uncharacterized protein.	0.675
dnpep	mrpl54	ENSCMIP00000008075	ENSCMIP00000004850	Uncharacterized protein; Belongs to the peptidase M18 family.	Uncharacterized protein.	0.682
dnpep	nme7	ENSCMIP00000008075	ENSCMIP00000011821	Uncharacterized protein; Belongs to the peptidase M18 family.	Nucleoside diphosphate kinase 7; Belongs to the NDK family.	0.731