LOC103172982 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103172982

Uncharacterized protein. (179 aa)

Predicted Functional Partners:

ENSCMIP00000005788

0.859

Prkcsh

0.859

hsp90b1

0.789

uggt2

0.745

uggt1

0.745

hspa5

0.719

pigg

0.716

LOC103177258

0.673

canx

0.673

clgn

0.673

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005788	LOC103172982	ENSCMIP00000005788	ENSCMIP00000008140	PRKCSH_1 domain-containing protein.	Uncharacterized protein.	0.859
ENSCMIP00000005788	LOC103177258	ENSCMIP00000005788	ENSCMIP00000008673	PRKCSH_1 domain-containing protein.	Calnexin.	0.632
ENSCMIP00000005788	Prkcsh	ENSCMIP00000005788	ENSCMIP00000012604	PRKCSH_1 domain-containing protein.	EF-hand domain-containing protein.	0.540
ENSCMIP00000005788	canx	ENSCMIP00000005788	ENSCMIP00000013769	PRKCSH_1 domain-containing protein.	Calnexin.	0.715
ENSCMIP00000005788	clgn	ENSCMIP00000005788	ENSCMIP00000048146	PRKCSH_1 domain-containing protein.	Calnexin-like protein.	0.715
ENSCMIP00000005788	hsp90b1	ENSCMIP00000005788	ENSCMIP00000020897	PRKCSH_1 domain-containing protein.	Endoplasmin-like protein.	0.650
LOC103172982	ENSCMIP00000005788	ENSCMIP00000008140	ENSCMIP00000005788	Uncharacterized protein.	PRKCSH_1 domain-containing protein.	0.859
LOC103172982	LOC103177258	ENSCMIP00000008140	ENSCMIP00000008673	Uncharacterized protein.	Calnexin.	0.673
LOC103172982	Prkcsh	ENSCMIP00000008140	ENSCMIP00000012604	Uncharacterized protein.	EF-hand domain-containing protein.	0.859
LOC103172982	canx	ENSCMIP00000008140	ENSCMIP00000013769	Uncharacterized protein.	Calnexin.	0.673
LOC103172982	clgn	ENSCMIP00000008140	ENSCMIP00000048146	Uncharacterized protein.	Calnexin-like protein.	0.673
LOC103172982	hsp90b1	ENSCMIP00000008140	ENSCMIP00000020897	Uncharacterized protein.	Endoplasmin-like protein.	0.789
LOC103172982	hspa5	ENSCMIP00000008140	ENSCMIP00000008220	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.719
LOC103172982	pigg	ENSCMIP00000008140	ENSCMIP00000038585	Uncharacterized protein.	Uncharacterized protein.	0.716
LOC103172982	uggt1	ENSCMIP00000008140	ENSCMIP00000033772	Uncharacterized protein.	Uncharacterized protein.	0.745
LOC103172982	uggt2	ENSCMIP00000008140	ENSCMIP00000023102	Uncharacterized protein.	Uncharacterized protein.	0.745
LOC103177258	ENSCMIP00000005788	ENSCMIP00000008673	ENSCMIP00000005788	Calnexin.	PRKCSH_1 domain-containing protein.	0.632
LOC103177258	LOC103172982	ENSCMIP00000008673	ENSCMIP00000008140	Calnexin.	Uncharacterized protein.	0.673
LOC103177258	Prkcsh	ENSCMIP00000008673	ENSCMIP00000012604	Calnexin.	EF-hand domain-containing protein.	0.632
LOC103177258	canx	ENSCMIP00000008673	ENSCMIP00000013769	Calnexin.	Calnexin.	0.902