paxx protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

paxx

Uncharacterized protein. (226 aa)

Predicted Functional Partners:

ENSCMIP00000037469

0.969

xrcc6

0.959

xrcc5

0.944

lig4

0.936

prkdc

0.836

xrcc4

0.834

rbx1

0.794

poll

0.770

aplf

0.687

abca2

0.686

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000037469	aplf	ENSCMIP00000037469	ENSCMIP00000049051	Uncharacterized protein.	Uncharacterized protein.	0.501
ENSCMIP00000037469	lig4	ENSCMIP00000037469	ENSCMIP00000010015	Uncharacterized protein.	DNA ligase.	0.998
ENSCMIP00000037469	paxx	ENSCMIP00000037469	ENSCMIP00000008142	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSCMIP00000037469	poll	ENSCMIP00000037469	ENSCMIP00000033643	Uncharacterized protein.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.803
ENSCMIP00000037469	prkdc	ENSCMIP00000037469	ENSCMIP00000012639	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.988
ENSCMIP00000037469	xrcc4	ENSCMIP00000037469	ENSCMIP00000016789	Uncharacterized protein.	Uncharacterized protein.	0.864
ENSCMIP00000037469	xrcc5	ENSCMIP00000037469	ENSCMIP00000038307	Uncharacterized protein.	Ku domain-containing protein.	0.991
ENSCMIP00000037469	xrcc6	ENSCMIP00000037469	ENSCMIP00000009666	Uncharacterized protein.	Uncharacterized protein.	0.969
abca2	paxx	ENSCMIP00000007926	ENSCMIP00000008142	Uncharacterized protein.	Uncharacterized protein.	0.686
aplf	ENSCMIP00000037469	ENSCMIP00000049051	ENSCMIP00000037469	Uncharacterized protein.	Uncharacterized protein.	0.501
aplf	lig4	ENSCMIP00000049051	ENSCMIP00000010015	Uncharacterized protein.	DNA ligase.	0.983
aplf	paxx	ENSCMIP00000049051	ENSCMIP00000008142	Uncharacterized protein.	Uncharacterized protein.	0.687
aplf	poll	ENSCMIP00000049051	ENSCMIP00000033643	Uncharacterized protein.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.733
aplf	prkdc	ENSCMIP00000049051	ENSCMIP00000012639	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.626
aplf	rbx1	ENSCMIP00000049051	ENSCMIP00000011588	Uncharacterized protein.	RING-type domain-containing protein.	0.470
aplf	xrcc4	ENSCMIP00000049051	ENSCMIP00000016789	Uncharacterized protein.	Uncharacterized protein.	0.485
aplf	xrcc5	ENSCMIP00000049051	ENSCMIP00000038307	Uncharacterized protein.	Ku domain-containing protein.	0.978
aplf	xrcc6	ENSCMIP00000049051	ENSCMIP00000009666	Uncharacterized protein.	Uncharacterized protein.	0.983
lig4	ENSCMIP00000037469	ENSCMIP00000010015	ENSCMIP00000037469	DNA ligase.	Uncharacterized protein.	0.998
lig4	aplf	ENSCMIP00000010015	ENSCMIP00000049051	DNA ligase.	Uncharacterized protein.	0.983