Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103184775Uncharacterized protein. (332 aa)    
Predicted Functional Partners:
ENSCMIP00000000239
ANK_REP_REGION domain-containing protein.
  
 
 0.694
asb16
Uncharacterized protein.
  
 
 0.658
rbm12
Uncharacterized protein.
    
 
 0.614
eloc
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
 0.602
ankrd1
ANK_REP_REGION domain-containing protein.
  
 
  0.584
commd9
COMM domain-containing protein.
    
  0.580
commd5
COMM domain-containing protein 5.
     
  0.577
commd8
COMM domain-containing protein.
   
  0.567
cul5
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.564
pwwp2b
PWWP domain-containing protein 2B-like protein.
      
 0.561
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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