Timm8a protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Timm8a

zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family. (54 aa)

Predicted Functional Partners:

timm13

0.998

LOC103187065

0.970

Timm10

0.970

timm9

0.886

timm23

0.844

tomm7

0.820

chchd4

0.819

tomm22

0.817

ENSCMIP00000030023

0.817

ENSCMIP00000003208

0.767

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003208	ENSCMIP00000030023	ENSCMIP00000003208	ENSCMIP00000030023	Uncharacterized protein.	Uncharacterized protein.	0.499
ENSCMIP00000003208	LOC103187065	ENSCMIP00000003208	ENSCMIP00000017132	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein.	0.704
ENSCMIP00000003208	Timm10	ENSCMIP00000003208	ENSCMIP00000038116	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein.	0.704
ENSCMIP00000003208	Timm8a	ENSCMIP00000003208	ENSCMIP00000008254	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family.	0.767
ENSCMIP00000003208	chchd4	ENSCMIP00000003208	ENSCMIP00000047780	Uncharacterized protein.	Mitochondrial intermembrane space import and assembly protein 40-A.	0.675
ENSCMIP00000003208	timm13	ENSCMIP00000003208	ENSCMIP00000011384	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family.	0.840
ENSCMIP00000003208	timm23	ENSCMIP00000003208	ENSCMIP00000021150	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.859
ENSCMIP00000003208	timm9	ENSCMIP00000003208	ENSCMIP00000002635	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim9.	0.759
ENSCMIP00000003208	tomm22	ENSCMIP00000003208	ENSCMIP00000002823	Uncharacterized protein.	Mitochondrial import receptor subunit TOM22-like protein.	0.985
ENSCMIP00000003208	tomm7	ENSCMIP00000003208	ENSCMIP00000040526	Uncharacterized protein.	Putative mitochondrial import receptor subunit TOM7-like protein.	0.977
ENSCMIP00000030023	ENSCMIP00000003208	ENSCMIP00000030023	ENSCMIP00000003208	Uncharacterized protein.	Uncharacterized protein.	0.499
ENSCMIP00000030023	LOC103187065	ENSCMIP00000030023	ENSCMIP00000017132	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein.	0.972
ENSCMIP00000030023	Timm10	ENSCMIP00000030023	ENSCMIP00000038116	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein.	0.972
ENSCMIP00000030023	Timm8a	ENSCMIP00000030023	ENSCMIP00000008254	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family.	0.817
ENSCMIP00000030023	chchd4	ENSCMIP00000030023	ENSCMIP00000047780	Uncharacterized protein.	Mitochondrial intermembrane space import and assembly protein 40-A.	0.795
ENSCMIP00000030023	timm13	ENSCMIP00000030023	ENSCMIP00000011384	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family.	0.842
ENSCMIP00000030023	timm23	ENSCMIP00000030023	ENSCMIP00000021150	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.832
ENSCMIP00000030023	timm9	ENSCMIP00000030023	ENSCMIP00000002635	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim9.	0.974
ENSCMIP00000030023	tomm22	ENSCMIP00000030023	ENSCMIP00000002823	Uncharacterized protein.	Mitochondrial import receptor subunit TOM22-like protein.	0.721
ENSCMIP00000030023	tomm7	ENSCMIP00000030023	ENSCMIP00000040526	Uncharacterized protein.	Putative mitochondrial import receptor subunit TOM7-like protein.	0.690