Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rabepkRab9 effector protein with kelch motifs. (374 aa)    
Predicted Functional Partners:
vamp3
V-SNARE coiled-coil homology domain-containing protein.
     
 0.960
ttc8
TPR_REGION domain-containing protein.
      
 0.792
aldh6a1
Aldedh domain-containing protein.
      
 0.781
rab9a
Ras-related protein Rab-9A-like protein.
    
 0.702
stx8
t-SNARE coiled-coil homology domain-containing protein.
     
 0.700
cacfd1
Uncharacterized protein.
      
 0.692
lrrc8c
Pannexin_like domain-containing protein.
      
 0.692
mmaa
Uncharacterized protein.
      
 0.692
ppp2r1a
Uncharacterized protein.
   
 
 0.674
eloc
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
   
  0.671
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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