Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpusd4PseudoU_synth_2 domain-containing protein. (384 aa)    
Predicted Functional Partners:
fastkd2
RAP domain-containing protein.
   
 0.813
ngrn
Uncharacterized protein.
   
 0.797
trub2
TruB_N domain-containing protein.
  
 0.791
ddx28
Uncharacterized protein.
   
 
 0.777
pus7
TRUD domain-containing protein.
   
 
 0.695
Mrm3
SpoU_methylase domain-containing protein.
  
 
 0.692
rcc1l
Uncharacterized protein.
    
 0.688
Malsu1
Uncharacterized protein.
  
 
 0.682
pus7l
TRUD domain-containing protein.
   
 
 0.673
mterf3
Uncharacterized protein.
   
 0.642
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.