rwdd1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rwdd1

RWD domain-containing protein 1. (240 aa)

Predicted Functional Partners:

drg2

0.999

drg1

0.989

gcn1

0.941

denr

0.878

esf1

0.801

zc3h15

0.735

dnph1

0.673

mindy3

0.650

rnf24

0.631

hspa14

0.629

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
denr	rwdd1	ENSCMIP00000012626	ENSCMIP00000008508	Density-regulated protein; Belongs to the DENR family.	RWD domain-containing protein 1.	0.878
dnph1	rwdd1	ENSCMIP00000042630	ENSCMIP00000008508	2'-deoxynucleoside 5'-phosphate N-hydrolase 1; Catalyzes the cleavage of the N-glycosidic bond of deoxyribonucleoside 5'-monophosphates to yield deoxyribose 5-phosphate and a purine or pyrimidine base. Deoxyribonucleoside 5'-monophosphates containing purine bases are preferred to those containing pyrimidine bases.	RWD domain-containing protein 1.	0.673
drg1	drg2	ENSCMIP00000010439	ENSCMIP00000031264	OBG-type G domain-containing protein.	OBG-type G domain-containing protein.	0.857
drg1	gcn1	ENSCMIP00000010439	ENSCMIP00000012091	OBG-type G domain-containing protein.	Translational activator GCN1.	0.585
drg1	hspa14	ENSCMIP00000010439	ENSCMIP00000005044	OBG-type G domain-containing protein.	Uncharacterized protein.	0.698
drg1	rwdd1	ENSCMIP00000010439	ENSCMIP00000008508	OBG-type G domain-containing protein.	RWD domain-containing protein 1.	0.989
drg1	zc3h15	ENSCMIP00000010439	ENSCMIP00000034097	OBG-type G domain-containing protein.	Uncharacterized protein.	0.999
drg2	drg1	ENSCMIP00000031264	ENSCMIP00000010439	OBG-type G domain-containing protein.	OBG-type G domain-containing protein.	0.857
drg2	gcn1	ENSCMIP00000031264	ENSCMIP00000012091	OBG-type G domain-containing protein.	Translational activator GCN1.	0.942
drg2	hspa14	ENSCMIP00000031264	ENSCMIP00000005044	OBG-type G domain-containing protein.	Uncharacterized protein.	0.612
drg2	rwdd1	ENSCMIP00000031264	ENSCMIP00000008508	OBG-type G domain-containing protein.	RWD domain-containing protein 1.	0.999
drg2	zc3h15	ENSCMIP00000031264	ENSCMIP00000034097	OBG-type G domain-containing protein.	Uncharacterized protein.	0.931
esf1	rwdd1	ENSCMIP00000049141	ENSCMIP00000008508	NUC153 domain-containing protein.	RWD domain-containing protein 1.	0.801
esf1	zc3h15	ENSCMIP00000049141	ENSCMIP00000034097	NUC153 domain-containing protein.	Uncharacterized protein.	0.565
gcn1	drg1	ENSCMIP00000012091	ENSCMIP00000010439	Translational activator GCN1.	OBG-type G domain-containing protein.	0.585
gcn1	drg2	ENSCMIP00000012091	ENSCMIP00000031264	Translational activator GCN1.	OBG-type G domain-containing protein.	0.942
gcn1	rwdd1	ENSCMIP00000012091	ENSCMIP00000008508	Translational activator GCN1.	RWD domain-containing protein 1.	0.941
gcn1	zc3h15	ENSCMIP00000012091	ENSCMIP00000034097	Translational activator GCN1.	Uncharacterized protein.	0.656
hspa14	drg1	ENSCMIP00000005044	ENSCMIP00000010439	Uncharacterized protein.	OBG-type G domain-containing protein.	0.698
hspa14	drg2	ENSCMIP00000005044	ENSCMIP00000031264	Uncharacterized protein.	OBG-type G domain-containing protein.	0.612