scai protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

scai

Uncharacterized protein. (606 aa)

Predicted Functional Partners:

Ahdc1

0.765

ENSCMIP00000001094

0.668

uprt

0.618

LOC103186042

0.584

lhx4

0.584

LOC103177095

0.572

prdm15

0.569

srf

0.555

myod1

0.552

otud3

0.539

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ahdc1	scai	ENSCMIP00000038385	ENSCMIP00000008560	DUF4683 domain-containing protein.	Uncharacterized protein.	0.765
ENSCMIP00000001094	scai	ENSCMIP00000001094	ENSCMIP00000008560	Endonuclease.	Uncharacterized protein.	0.668
LOC103177095	scai	ENSCMIP00000038796	ENSCMIP00000008560	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.572
LOC103186042	scai	ENSCMIP00000017652	ENSCMIP00000008560	Uncharacterized protein.	Uncharacterized protein.	0.584
lhx4	scai	ENSCMIP00000039446	ENSCMIP00000008560	Uncharacterized protein.	Uncharacterized protein.	0.584
myod1	scai	ENSCMIP00000027552	ENSCMIP00000008560	Myogenic factor.	Uncharacterized protein.	0.552
myod1	srf	ENSCMIP00000027552	ENSCMIP00000043442	Myogenic factor.	MADS-box domain-containing protein.	0.648
otud3	scai	ENSCMIP00000034487	ENSCMIP00000008560	OTU domain-containing protein.	Uncharacterized protein.	0.539
prdm15	scai	ENSCMIP00000029762	ENSCMIP00000008560	Uncharacterized protein.	Uncharacterized protein.	0.569
scai	Ahdc1	ENSCMIP00000008560	ENSCMIP00000038385	Uncharacterized protein.	DUF4683 domain-containing protein.	0.765
scai	ENSCMIP00000001094	ENSCMIP00000008560	ENSCMIP00000001094	Uncharacterized protein.	Endonuclease.	0.668
scai	LOC103177095	ENSCMIP00000008560	ENSCMIP00000038796	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.572
scai	LOC103186042	ENSCMIP00000008560	ENSCMIP00000017652	Uncharacterized protein.	Uncharacterized protein.	0.584
scai	lhx4	ENSCMIP00000008560	ENSCMIP00000039446	Uncharacterized protein.	Uncharacterized protein.	0.584
scai	myod1	ENSCMIP00000008560	ENSCMIP00000027552	Uncharacterized protein.	Myogenic factor.	0.552
scai	otud3	ENSCMIP00000008560	ENSCMIP00000034487	Uncharacterized protein.	OTU domain-containing protein.	0.539
scai	prdm15	ENSCMIP00000008560	ENSCMIP00000029762	Uncharacterized protein.	Uncharacterized protein.	0.569
scai	srf	ENSCMIP00000008560	ENSCMIP00000043442	Uncharacterized protein.	MADS-box domain-containing protein.	0.555
scai	uprt	ENSCMIP00000008560	ENSCMIP00000039131	Uncharacterized protein.	Uncharacterized protein.	0.618
srf	myod1	ENSCMIP00000043442	ENSCMIP00000027552	MADS-box domain-containing protein.	Myogenic factor.	0.648