Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubr7Putative E3 ubiquitin-protein ligase UBR7. (429 aa)    
Predicted Functional Partners:
nasp
TPR_REGION domain-containing protein.
   
 
 0.747
rnf181
RING-type domain-containing protein.
      
 0.716
ENSCMIP00000040747
Uncharacterized protein.
      
 0.682
chaf1b
WD_REPEATS_REGION domain-containing protein.
      
 0.641
prim1
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
  
 0.641
ubr3
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.604
ccdc150
Uncharacterized protein.
      
 0.598
ccdc77
Coiled-coil domain-containing protein 77.
      
 0.589
gins2
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
   
  
 0.561
unc79
Uncharacterized protein.
      
 0.552
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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