Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103173058Uncharacterized protein. (529 aa)    
Predicted Functional Partners:
vps26a
Vacuolar protein sorting-associated protein 26A-like protein.
    
   0.623
snx3
PX domain-containing protein.
    
 
 0.513
snx12
PX domain-containing protein.
    
 
 0.513
Slc30a1
Uncharacterized protein.
  
 
 0.509
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
   0.489
vps26b
Uncharacterized protein.
    
   0.485
LOC103176425
Cytochrome b561 domain-containing protein.
      
 0.467
Ndfip1
Uncharacterized protein.
   
 
 0.458
LOC103184505
Uncharacterized protein.
   
 
 0.458
ndfip2
Uncharacterized protein.
   
 
 0.458
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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