letm1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

letm1

Uncharacterized protein. (770 aa)

Predicted Functional Partners:

rpl8

0.600

rps2

0.559

pgrmc2

0.558

cdca4

0.542

mrpl22

0.539

rps7

0.536

sh3rf3

0.524

itgbl1

0.519

nsd2

0.518

imp3

0.518

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cdca4	itgbl1	ENSCMIP00000030535	ENSCMIP00000004669	SERTA domain-containing protein.	Uncharacterized protein.	0.527
cdca4	letm1	ENSCMIP00000030535	ENSCMIP00000008658	SERTA domain-containing protein.	Uncharacterized protein.	0.542
cdca4	pgrmc2	ENSCMIP00000030535	ENSCMIP00000002592	SERTA domain-containing protein.	Uncharacterized protein.	0.542
cdca4	sh3rf3	ENSCMIP00000030535	ENSCMIP00000038237	SERTA domain-containing protein.	Uncharacterized protein.	0.617
imp3	letm1	ENSCMIP00000008514	ENSCMIP00000008658	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein.	0.518
imp3	mrpl22	ENSCMIP00000008514	ENSCMIP00000040676	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.989
imp3	rpl8	ENSCMIP00000008514	ENSCMIP00000025135	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	60S ribosomal protein L8-like protein.	0.963
imp3	rps2	ENSCMIP00000008514	ENSCMIP00000042049	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.996
imp3	rps7	ENSCMIP00000008514	ENSCMIP00000015021	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
itgbl1	cdca4	ENSCMIP00000004669	ENSCMIP00000030535	Uncharacterized protein.	SERTA domain-containing protein.	0.527
itgbl1	letm1	ENSCMIP00000004669	ENSCMIP00000008658	Uncharacterized protein.	Uncharacterized protein.	0.519
itgbl1	pgrmc2	ENSCMIP00000004669	ENSCMIP00000002592	Uncharacterized protein.	Uncharacterized protein.	0.512
itgbl1	sh3rf3	ENSCMIP00000004669	ENSCMIP00000038237	Uncharacterized protein.	Uncharacterized protein.	0.704
letm1	cdca4	ENSCMIP00000008658	ENSCMIP00000030535	Uncharacterized protein.	SERTA domain-containing protein.	0.542
letm1	imp3	ENSCMIP00000008658	ENSCMIP00000008514	Uncharacterized protein.	IMP3, U3 small nucleolar ribonucleoprotein-like protein.	0.518
letm1	itgbl1	ENSCMIP00000008658	ENSCMIP00000004669	Uncharacterized protein.	Uncharacterized protein.	0.519
letm1	mrpl22	ENSCMIP00000008658	ENSCMIP00000040676	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.539
letm1	nsd2	ENSCMIP00000008658	ENSCMIP00000008511	Uncharacterized protein.	Uncharacterized protein.	0.518
letm1	pgrmc2	ENSCMIP00000008658	ENSCMIP00000002592	Uncharacterized protein.	Uncharacterized protein.	0.558
letm1	rpl8	ENSCMIP00000008658	ENSCMIP00000025135	Uncharacterized protein.	60S ribosomal protein L8-like protein.	0.600