Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
letm1Uncharacterized protein. (770 aa)    
Predicted Functional Partners:
fam118a
SIR2_2 domain-containing protein.
    
 
 0.611
nsd2
Uncharacterized protein.
      
 0.587
pcgf3
RING-type domain-containing protein.
      
 0.586
micu1
Uncharacterized protein.
      
 0.585
pmpcb
Uncharacterized protein; Belongs to the peptidase M16 family.
   
 0.584
LOC103176704
Uncharacterized protein.
   
 0.584
cdca4
SERTA domain-containing protein.
      
 0.580
rpl8
60S ribosomal protein L8-like protein.
    
 
 0.564
ccdc77
Coiled-coil domain-containing protein 77.
    
   0.562
itgbl1
Uncharacterized protein.
      
 0.549
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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