mta3 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

mta3

Uncharacterized protein. (610 aa)

Predicted Functional Partners:

gatad2a

0.929

mbd3

0.902

mta1

0.901

LOC103187519

0.901

hdac2

0.860

hdac1

0.860

ENSCMIP00000003412

0.848

LOC103173630

0.848

LOC103174007

0.848

chd5

0.848

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003412	LOC103173630	ENSCMIP00000003412	ENSCMIP00000004790	Helicase ATP-binding domain-containing protein.	DUF1087 domain-containing protein.	0.952
ENSCMIP00000003412	LOC103174007	ENSCMIP00000003412	ENSCMIP00000006098	Helicase ATP-binding domain-containing protein.	SNF2_N domain-containing protein.	0.951
ENSCMIP00000003412	LOC103187519	ENSCMIP00000003412	ENSCMIP00000038733	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.848
ENSCMIP00000003412	chd5	ENSCMIP00000003412	ENSCMIP00000015705	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.545
ENSCMIP00000003412	gatad2a	ENSCMIP00000003412	ENSCMIP00000009756	Helicase ATP-binding domain-containing protein.	GATA-type domain-containing protein.	0.931
ENSCMIP00000003412	hdac1	ENSCMIP00000003412	ENSCMIP00000034400	Helicase ATP-binding domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.834
ENSCMIP00000003412	hdac2	ENSCMIP00000003412	ENSCMIP00000010916	Helicase ATP-binding domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.834
ENSCMIP00000003412	mbd3	ENSCMIP00000003412	ENSCMIP00000009360	Helicase ATP-binding domain-containing protein.	MBD domain-containing protein.	0.852
ENSCMIP00000003412	mta1	ENSCMIP00000003412	ENSCMIP00000034356	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.848
ENSCMIP00000003412	mta3	ENSCMIP00000003412	ENSCMIP00000008685	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.848
LOC103173630	ENSCMIP00000003412	ENSCMIP00000004790	ENSCMIP00000003412	DUF1087 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.952
LOC103173630	LOC103174007	ENSCMIP00000004790	ENSCMIP00000006098	DUF1087 domain-containing protein.	SNF2_N domain-containing protein.	0.951
LOC103173630	LOC103187519	ENSCMIP00000004790	ENSCMIP00000038733	DUF1087 domain-containing protein.	Uncharacterized protein.	0.848
LOC103173630	chd5	ENSCMIP00000004790	ENSCMIP00000015705	DUF1087 domain-containing protein.	Uncharacterized protein.	0.586
LOC103173630	gatad2a	ENSCMIP00000004790	ENSCMIP00000009756	DUF1087 domain-containing protein.	GATA-type domain-containing protein.	0.931
LOC103173630	hdac1	ENSCMIP00000004790	ENSCMIP00000034400	DUF1087 domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.834
LOC103173630	hdac2	ENSCMIP00000004790	ENSCMIP00000010916	DUF1087 domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.834
LOC103173630	mbd3	ENSCMIP00000004790	ENSCMIP00000009360	DUF1087 domain-containing protein.	MBD domain-containing protein.	0.852
LOC103173630	mta1	ENSCMIP00000004790	ENSCMIP00000034356	DUF1087 domain-containing protein.	Uncharacterized protein.	0.848
LOC103173630	mta3	ENSCMIP00000004790	ENSCMIP00000008685	DUF1087 domain-containing protein.	Uncharacterized protein.	0.848