LOC103173116 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103173116

AC_N domain-containing protein. (294 aa)

Predicted Functional Partners:

adcy1

0.911

ENSCMIP00000012237

0.900

adcy5

0.900

ENSCMIP00000003222

0.646

ENSCMIP00000008497

0.646

gnas

0.646

gnaz

0.623

ENSCMIP00000014007

0.579

adcy9

0.571

gng2

0.553

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003222	ENSCMIP00000008497	ENSCMIP00000003222	ENSCMIP00000008497	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSCMIP00000003222	ENSCMIP00000012237	ENSCMIP00000003222	ENSCMIP00000012237	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.603
ENSCMIP00000003222	ENSCMIP00000014007	ENSCMIP00000003222	ENSCMIP00000014007	Uncharacterized protein.	Uncharacterized protein.	0.820
ENSCMIP00000003222	LOC103173116	ENSCMIP00000003222	ENSCMIP00000008847	Uncharacterized protein.	AC_N domain-containing protein.	0.646
ENSCMIP00000003222	adcy1	ENSCMIP00000003222	ENSCMIP00000015428	Uncharacterized protein.	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.815
ENSCMIP00000003222	adcy5	ENSCMIP00000003222	ENSCMIP00000040926	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.646
ENSCMIP00000003222	adcy9	ENSCMIP00000003222	ENSCMIP00000016610	Uncharacterized protein.	Uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.923
ENSCMIP00000003222	gnas	ENSCMIP00000003222	ENSCMIP00000036503	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSCMIP00000003222	gnaz	ENSCMIP00000003222	ENSCMIP00000008945	Uncharacterized protein.	Uncharacterized protein.	0.759
ENSCMIP00000003222	gng2	ENSCMIP00000003222	ENSCMIP00000025713	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.813
ENSCMIP00000008497	ENSCMIP00000003222	ENSCMIP00000008497	ENSCMIP00000003222	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSCMIP00000008497	ENSCMIP00000012237	ENSCMIP00000008497	ENSCMIP00000012237	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.603
ENSCMIP00000008497	ENSCMIP00000014007	ENSCMIP00000008497	ENSCMIP00000014007	Uncharacterized protein.	Uncharacterized protein.	0.820
ENSCMIP00000008497	LOC103173116	ENSCMIP00000008497	ENSCMIP00000008847	Uncharacterized protein.	AC_N domain-containing protein.	0.646
ENSCMIP00000008497	adcy1	ENSCMIP00000008497	ENSCMIP00000015428	Uncharacterized protein.	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.815
ENSCMIP00000008497	adcy5	ENSCMIP00000008497	ENSCMIP00000040926	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.646
ENSCMIP00000008497	adcy9	ENSCMIP00000008497	ENSCMIP00000016610	Uncharacterized protein.	Uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.923
ENSCMIP00000008497	gnas	ENSCMIP00000008497	ENSCMIP00000036503	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSCMIP00000008497	gnaz	ENSCMIP00000008497	ENSCMIP00000008945	Uncharacterized protein.	Uncharacterized protein.	0.759
ENSCMIP00000008497	gng2	ENSCMIP00000008497	ENSCMIP00000025713	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.813