asb2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

asb2

Ankyrin repeat and SOCS box protein 2. (638 aa)

Predicted Functional Partners:

cul5

0.964

eloc

0.936

rnf7

0.897

elob

0.882

Asb17

0.857

fbxw4

0.801

Ubc

0.755

ENSCMIP00000002451

0.742

LOC103173878

0.742

flnc

0.742

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Asb17	asb2	ENSCMIP00000020960	ENSCMIP00000008861	Uncharacterized protein.	Ankyrin repeat and SOCS box protein 2.	0.857
Asb17	cul5	ENSCMIP00000020960	ENSCMIP00000020062	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.402
Asb17	elob	ENSCMIP00000020960	ENSCMIP00000012522	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.418
ENSCMIP00000002451	LOC103173878	ENSCMIP00000002451	ENSCMIP00000005025	Uncharacterized protein.	Uncharacterized protein.	0.929
ENSCMIP00000002451	asb2	ENSCMIP00000002451	ENSCMIP00000008861	Uncharacterized protein.	Ankyrin repeat and SOCS box protein 2.	0.742
LOC103173878	ENSCMIP00000002451	ENSCMIP00000005025	ENSCMIP00000002451	Uncharacterized protein.	Uncharacterized protein.	0.929
LOC103173878	asb2	ENSCMIP00000005025	ENSCMIP00000008861	Uncharacterized protein.	Ankyrin repeat and SOCS box protein 2.	0.742
Ubc	asb2	ENSCMIP00000028897	ENSCMIP00000008861	Ubiquitin-like domain-containing protein.	Ankyrin repeat and SOCS box protein 2.	0.755
Ubc	cul5	ENSCMIP00000028897	ENSCMIP00000020062	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.831
Ubc	elob	ENSCMIP00000028897	ENSCMIP00000012522	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.831
Ubc	eloc	ENSCMIP00000028897	ENSCMIP00000004246	Ubiquitin-like domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.864
Ubc	rnf7	ENSCMIP00000028897	ENSCMIP00000014654	Ubiquitin-like domain-containing protein.	RING-box protein 2-like protein.	0.823
asb2	Asb17	ENSCMIP00000008861	ENSCMIP00000020960	Ankyrin repeat and SOCS box protein 2.	Uncharacterized protein.	0.857
asb2	ENSCMIP00000002451	ENSCMIP00000008861	ENSCMIP00000002451	Ankyrin repeat and SOCS box protein 2.	Uncharacterized protein.	0.742
asb2	LOC103173878	ENSCMIP00000008861	ENSCMIP00000005025	Ankyrin repeat and SOCS box protein 2.	Uncharacterized protein.	0.742
asb2	Ubc	ENSCMIP00000008861	ENSCMIP00000028897	Ankyrin repeat and SOCS box protein 2.	Ubiquitin-like domain-containing protein.	0.755
asb2	cul5	ENSCMIP00000008861	ENSCMIP00000020062	Ankyrin repeat and SOCS box protein 2.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.964
asb2	elob	ENSCMIP00000008861	ENSCMIP00000012522	Ankyrin repeat and SOCS box protein 2.	Ubiquitin-like domain-containing protein.	0.882
asb2	eloc	ENSCMIP00000008861	ENSCMIP00000004246	Ankyrin repeat and SOCS box protein 2.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.936
asb2	fbxw4	ENSCMIP00000008861	ENSCMIP00000033625	Ankyrin repeat and SOCS box protein 2.	WD_REPEATS_REGION domain-containing protein.	0.801