depdc5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

depdc5

DEP domain-containing protein. (1527 aa)

Predicted Functional Partners:

wdr59

0.999

nprl2

0.999

mios

0.999

Nprl3

0.998

LOC103177256

0.998

sec13

0.998

ENSCMIP00000005477

0.994

LOC103179817

0.993

wdr24

0.993

itfg2

0.992

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005477	LOC103177256	ENSCMIP00000005477	ENSCMIP00000008663	Uncharacterized protein.	Uncharacterized protein.	0.940
ENSCMIP00000005477	LOC103179817	ENSCMIP00000005477	ENSCMIP00000018235	Uncharacterized protein.	Uncharacterized protein.	0.868
ENSCMIP00000005477	Nprl3	ENSCMIP00000005477	ENSCMIP00000005482	Uncharacterized protein.	Uncharacterized protein.	0.626
ENSCMIP00000005477	depdc5	ENSCMIP00000005477	ENSCMIP00000008917	Uncharacterized protein.	DEP domain-containing protein.	0.994
ENSCMIP00000005477	itfg2	ENSCMIP00000005477	ENSCMIP00000030591	Uncharacterized protein.	Uncharacterized protein.	0.888
ENSCMIP00000005477	mios	ENSCMIP00000005477	ENSCMIP00000017396	Uncharacterized protein.	Zinc_ribbon_16 domain-containing protein.	0.978
ENSCMIP00000005477	nprl2	ENSCMIP00000005477	ENSCMIP00000017254	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSCMIP00000005477	sec13	ENSCMIP00000005477	ENSCMIP00000049308	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.935
ENSCMIP00000005477	wdr24	ENSCMIP00000005477	ENSCMIP00000019850	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.941
ENSCMIP00000005477	wdr59	ENSCMIP00000005477	ENSCMIP00000013428	Uncharacterized protein.	Uncharacterized protein.	0.989
LOC103177256	ENSCMIP00000005477	ENSCMIP00000008663	ENSCMIP00000005477	Uncharacterized protein.	Uncharacterized protein.	0.940
LOC103177256	LOC103179817	ENSCMIP00000008663	ENSCMIP00000018235	Uncharacterized protein.	Uncharacterized protein.	0.706
LOC103177256	Nprl3	ENSCMIP00000008663	ENSCMIP00000005482	Uncharacterized protein.	Uncharacterized protein.	0.993
LOC103177256	depdc5	ENSCMIP00000008663	ENSCMIP00000008917	Uncharacterized protein.	DEP domain-containing protein.	0.998
LOC103177256	itfg2	ENSCMIP00000008663	ENSCMIP00000030591	Uncharacterized protein.	Uncharacterized protein.	0.657
LOC103177256	mios	ENSCMIP00000008663	ENSCMIP00000017396	Uncharacterized protein.	Zinc_ribbon_16 domain-containing protein.	0.984
LOC103177256	nprl2	ENSCMIP00000008663	ENSCMIP00000017254	Uncharacterized protein.	Uncharacterized protein.	0.997
LOC103177256	sec13	ENSCMIP00000008663	ENSCMIP00000049308	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.900
LOC103177256	wdr24	ENSCMIP00000008663	ENSCMIP00000019850	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.905
LOC103177256	wdr59	ENSCMIP00000008663	ENSCMIP00000013428	Uncharacterized protein.	Uncharacterized protein.	0.905