Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSCMIP00000008939PDE4_UCR domain-containing protein. (158 aa)    
Predicted Functional Partners:
pde7b
Phosphodiesterase.
 
   
  0.760
pde1a
Phosphodiesterase.
 
  
 0.742
pde7a
Phosphodiesterase.
 
   
  0.687
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.646
prkaca
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.646
pde1c
Phosphodiesterase.
 
  
 0.578
prkx
Uncharacterized protein.
   
 0.562
ppp1r1b
Uncharacterized protein.
     
 0.551
LOC103175521
Uncharacterized protein.
   
 0.514
Pde9a
PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.
 
      0.481
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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