Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000009049Uncharacterized protein. (2451 aa)    
Predicted Functional Partners:
vrk2
Protein kinase domain-containing protein.
    
 0.542
vrk1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.542
ppp2r1a
Uncharacterized protein.
    
  0.525
atm
Non-specific serine/threonine protein kinase.
   
 0.512
arl1
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
  0.478
plk4
Uncharacterized protein.
    
 0.473
banf1
Barrier-to-autointegration factor.
    
 0.464
ppp2ca
Serine/threonine-protein phosphatase.
    
 0.460
LOC103186729
Serine/threonine-protein phosphatase.
    
 0.460
cenpj
Tcp10_C domain-containing protein.
    
 0.445
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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