Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103173168Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
ENSCMIP00000009739
BTB domain-containing protein.
 
      0.900
ezh2
Uncharacterized protein.
   
 0.724
ENSCMIP00000007108
RING-type domain-containing protein.
    
  0.661
pcgf2
RING-type domain-containing protein.
    
  0.661
runx1t1
Uncharacterized protein.
    
 
 0.629
cbx6
Chromobox protein-like 7.
    
 0.627
suz12
VEFS-Box domain-containing protein.
    
 0.612
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.610
ENSCMIP00000020353
Uncharacterized protein.
    
 0.603
LOC103190117
Synaptonemal complex protein 3.
    
 
 0.602
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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