Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ift43Uncharacterized protein. (80 aa)    
Predicted Functional Partners:
ift122
WD_REPEATS_REGION domain-containing protein.
    
 0.993
ttc21b
Uncharacterized protein.
    
 0.992
wdr19
WD_REPEATS_REGION domain-containing protein.
    
 0.992
wdr35
WD repeat-containing protein 35.
    
 0.991
ift140
WD_REPEATS_REGION domain-containing protein.
    
 0.991
cunh11orf74
Uncharacterized protein.
    
 
 0.937
ttc21a
Uncharacterized protein.
    
 0.920
ift80
WD_REPEATS_REGION domain-containing protein.
    
 0.883
ift81
IFT81_CH domain-containing protein.
   
 
 0.875
ift52
Intraflagellar transport protein 52-like protein.
     
 0.867
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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