Erh protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Erh

Uncharacterized protein. (128 aa)

Predicted Functional Partners:

chtop

0.625

snrpd1

0.625

snrpe

0.616

snrpf

0.601

snrpg

0.579

snrpd3

0.538

alyref

0.537

LOC103172466

0.497

eif4a3

0.471

ENSCMIP00000002664

0.465

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002664	Erh	ENSCMIP00000002664	ENSCMIP00000009157	Uncharacterized protein.	Uncharacterized protein.	0.465
ENSCMIP00000002664	alyref	ENSCMIP00000002664	ENSCMIP00000048764	Uncharacterized protein.	RRM domain-containing protein.	0.676
ENSCMIP00000002664	eif4a3	ENSCMIP00000002664	ENSCMIP00000011072	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.536
ENSCMIP00000002664	snrpd1	ENSCMIP00000002664	ENSCMIP00000024695	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.415
ENSCMIP00000002664	snrpd3	ENSCMIP00000002664	ENSCMIP00000030273	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.505
ENSCMIP00000002664	snrpe	ENSCMIP00000002664	ENSCMIP00000037778	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.595
ENSCMIP00000002664	snrpf	ENSCMIP00000002664	ENSCMIP00000035707	Uncharacterized protein.	Sm domain-containing protein.	0.635
ENSCMIP00000002664	snrpg	ENSCMIP00000002664	ENSCMIP00000013211	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.483
Erh	ENSCMIP00000002664	ENSCMIP00000009157	ENSCMIP00000002664	Uncharacterized protein.	Uncharacterized protein.	0.465
Erh	LOC103172466	ENSCMIP00000009157	ENSCMIP00000009070	Uncharacterized protein.	Uncharacterized protein.	0.497
Erh	alyref	ENSCMIP00000009157	ENSCMIP00000048764	Uncharacterized protein.	RRM domain-containing protein.	0.537
Erh	chtop	ENSCMIP00000009157	ENSCMIP00000010326	Uncharacterized protein.	FoP_duplication domain-containing protein.	0.625
Erh	eif4a3	ENSCMIP00000009157	ENSCMIP00000011072	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.471
Erh	snrpd1	ENSCMIP00000009157	ENSCMIP00000024695	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.625
Erh	snrpd3	ENSCMIP00000009157	ENSCMIP00000030273	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.538
Erh	snrpe	ENSCMIP00000009157	ENSCMIP00000037778	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.616
Erh	snrpf	ENSCMIP00000009157	ENSCMIP00000035707	Uncharacterized protein.	Sm domain-containing protein.	0.601
Erh	snrpg	ENSCMIP00000009157	ENSCMIP00000013211	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.579
LOC103172466	Erh	ENSCMIP00000009070	ENSCMIP00000009157	Uncharacterized protein.	Uncharacterized protein.	0.497
LOC103172466	alyref	ENSCMIP00000009070	ENSCMIP00000048764	Uncharacterized protein.	RRM domain-containing protein.	0.799