STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubr5Uncharacterized protein. (2794 aa)    
Predicted Functional Partners:
bub3
Uncharacterized protein.
    
 
 0.965
ube2l3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.963
bub1
Uncharacterized protein.
    
   0.962
paip2
Polyadenylate-binding protein-interacting protein 2, isoform CRAb.
    
 
 0.926
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
   
  
 0.923
mcrs1
FHA domain-containing protein.
    
   0.912
Ubc
Ubiquitin-like domain-containing protein.
    
 
 0.904
bub1b
Protein kinase domain-containing protein.
    
   0.900
ENSCMIP00000043742
BUB1 N-terminal domain-containing protein.
    
   0.900
cep78
Uncharacterized protein.
    
 
 0.894
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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