STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppm1bProtein phosphatase 1B. (477 aa)    
Predicted Functional Partners:
map3k7
Protein kinase domain-containing protein.
   
 0.915
ENSCMIP00000006142
PPM-type phosphatase domain-containing protein.
  
  
 
0.901
slc3a1
Aamy domain-containing protein.
 
 
  
 0.618
smad4
Mothers against decapentaplegic homolog.
    
 0.584
prkaa1
Non-specific serine/threonine protein kinase.
   
 0.547
prkaa2
Non-specific serine/threonine protein kinase.
   
 0.547
arih1
RBR-type E3 ubiquitin transferase.
   
 
 0.529
prkab1
5'-AMP-activated protein kinase subunit beta-1-like protein.
   
 0.497
LOC103179976
Protein kinase, AMP-activated, beta 2 non-catalytic subunit.
   
 0.497
smad2
Mothers against decapentaplegic homolog.
   
 0.480
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.