LOC103180805 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

LOC103180805

Uncharacterized protein. (459 aa)

Predicted Functional Partners:

slc7a11

0.945

LOC103180885

0.945

ENSCMIP00000032813

0.945

LOC103181811

0.945

LOC103190541

0.930

slc7a5

0.930

slc7a10

0.930

LOC103185915

0.912

slc7a7

0.912

ENSCMIP00000029171

0.801

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000029171	ENSCMIP00000032813	ENSCMIP00000029171	ENSCMIP00000032813	Uncharacterized protein.	Uncharacterized protein.	0.557
ENSCMIP00000029171	LOC103180805	ENSCMIP00000029171	ENSCMIP00000009244	Uncharacterized protein.	Uncharacterized protein.	0.801
ENSCMIP00000032813	ENSCMIP00000029171	ENSCMIP00000032813	ENSCMIP00000029171	Uncharacterized protein.	Uncharacterized protein.	0.557
ENSCMIP00000032813	LOC103180805	ENSCMIP00000032813	ENSCMIP00000009244	Uncharacterized protein.	Uncharacterized protein.	0.945
ENSCMIP00000032813	LOC103190541	ENSCMIP00000032813	ENSCMIP00000033313	Uncharacterized protein.	Uncharacterized protein.	0.771
LOC103180805	ENSCMIP00000029171	ENSCMIP00000009244	ENSCMIP00000029171	Uncharacterized protein.	Uncharacterized protein.	0.801
LOC103180805	ENSCMIP00000032813	ENSCMIP00000009244	ENSCMIP00000032813	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103180805	LOC103180885	ENSCMIP00000009244	ENSCMIP00000015070	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103180805	LOC103181811	ENSCMIP00000009244	ENSCMIP00000048413	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103180805	LOC103185915	ENSCMIP00000009244	ENSCMIP00000013141	Uncharacterized protein.	Uncharacterized protein.	0.912
LOC103180805	LOC103190541	ENSCMIP00000009244	ENSCMIP00000033313	Uncharacterized protein.	Uncharacterized protein.	0.930
LOC103180805	slc7a10	ENSCMIP00000009244	ENSCMIP00000036847	Uncharacterized protein.	Uncharacterized protein.	0.930
LOC103180805	slc7a11	ENSCMIP00000009244	ENSCMIP00000000419	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103180805	slc7a5	ENSCMIP00000009244	ENSCMIP00000036667	Uncharacterized protein.	Uncharacterized protein.	0.930
LOC103180805	slc7a7	ENSCMIP00000009244	ENSCMIP00000028908	Uncharacterized protein.	Uncharacterized protein.	0.912
LOC103180885	LOC103180805	ENSCMIP00000015070	ENSCMIP00000009244	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103180885	LOC103181811	ENSCMIP00000015070	ENSCMIP00000048413	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103180885	slc7a11	ENSCMIP00000015070	ENSCMIP00000000419	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC103181811	LOC103180805	ENSCMIP00000048413	ENSCMIP00000009244	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC103181811	LOC103180885	ENSCMIP00000048413	ENSCMIP00000015070	Uncharacterized protein.	Uncharacterized protein.	0.901