Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mex3dRING-type domain-containing protein. (487 aa)    
Predicted Functional Partners:
ywhae
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
   0.590
fam214a
DUF4210 domain-containing protein.
      
 0.588
ENSCMIP00000007243
RING-type domain-containing protein.
   
   0.561
nudcd1
CS domain-containing protein.
    
   0.552
uba52
Ribosomal protein L40-like isoform 1.
     
  0.540
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
    
 
 0.528
mycbp2
Uncharacterized protein.
    
 
 0.527
rnf122
RING finger protein 122-like protein.
   
  
 0.526
zfp36l1
Uncharacterized protein.
   
 
 0.505
dhx9
Uncharacterized protein.
    
 
 0.503
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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