abcc5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

abcc5

Uncharacterized protein. (1347 aa)

Predicted Functional Partners:

abcc1

0.935

abcc3

0.934

abcc4

0.900

abcg4

0.541

abcg1

0.541

derl1

0.536

rapgef4

0.515

Rpl19

0.513

snx27

0.509

usp10

0.500

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rpl19	abcc4	ENSCMIP00000042127	ENSCMIP00000024892	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Uncharacterized protein.	0.513
Rpl19	abcc5	ENSCMIP00000042127	ENSCMIP00000009367	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Uncharacterized protein.	0.513
Rpl19	abcg1	ENSCMIP00000042127	ENSCMIP00000041895	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	ABC transporter domain-containing protein.	0.594
Rpl19	abcg4	ENSCMIP00000042127	ENSCMIP00000015186	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	ABC transporter domain-containing protein.	0.594
abcc1	abcc4	ENSCMIP00000021309	ENSCMIP00000024892	Uncharacterized protein.	Uncharacterized protein.	0.934
abcc1	abcc5	ENSCMIP00000021309	ENSCMIP00000009367	Uncharacterized protein.	Uncharacterized protein.	0.935
abcc1	abcg1	ENSCMIP00000021309	ENSCMIP00000041895	Uncharacterized protein.	ABC transporter domain-containing protein.	0.438
abcc1	abcg4	ENSCMIP00000021309	ENSCMIP00000015186	Uncharacterized protein.	ABC transporter domain-containing protein.	0.438
abcc1	derl1	ENSCMIP00000021309	ENSCMIP00000016840	Uncharacterized protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.536
abcc1	rapgef4	ENSCMIP00000021309	ENSCMIP00000028973	Uncharacterized protein.	Uncharacterized protein.	0.515
abcc1	usp10	ENSCMIP00000021309	ENSCMIP00000030785	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.500
abcc3	abcc4	ENSCMIP00000039637	ENSCMIP00000024892	Uncharacterized protein.	Uncharacterized protein.	0.934
abcc3	abcc5	ENSCMIP00000039637	ENSCMIP00000009367	Uncharacterized protein.	Uncharacterized protein.	0.934
abcc3	abcg1	ENSCMIP00000039637	ENSCMIP00000041895	Uncharacterized protein.	ABC transporter domain-containing protein.	0.438
abcc3	abcg4	ENSCMIP00000039637	ENSCMIP00000015186	Uncharacterized protein.	ABC transporter domain-containing protein.	0.438
abcc3	derl1	ENSCMIP00000039637	ENSCMIP00000016840	Uncharacterized protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.536
abcc3	rapgef4	ENSCMIP00000039637	ENSCMIP00000028973	Uncharacterized protein.	Uncharacterized protein.	0.515
abcc3	usp10	ENSCMIP00000039637	ENSCMIP00000030785	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.500
abcc4	Rpl19	ENSCMIP00000024892	ENSCMIP00000042127	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.513
abcc4	abcc1	ENSCMIP00000024892	ENSCMIP00000021309	Uncharacterized protein.	Uncharacterized protein.	0.934