Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103173265SH3 domain-containing protein. (170 aa)    
Predicted Functional Partners:
LOC103171657
Uncharacterized protein.
   
 0.576
rasa1
Uncharacterized protein.
      
 0.528
ankrd54
ANK_REP_REGION domain-containing protein.
    
 
 0.511
ppp1r1b
Uncharacterized protein.
      
 0.484
rpl28
60S ribosomal protein L28-like protein.
      
 0.473
cryba2
Beta-crystallin A2-like protein; Belongs to the beta/gamma-crystallin family.
    
   0.471
Oc90
Phospholipase A(2).
      
 0.471
fpgt
Fucokinase domain-containing protein.
      
 0.463
tmod1
Tropomodulin-1.
   
 0.451
trip13
Thyroid receptor-interacting protein 13-like protein; Belongs to the AAA ATPase family.
    
   0.430
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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